Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11k18
(795 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-tr... 228 6e-61
SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans i... 199 4e-52
SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans... 163 2e-41
SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-tr... 163 3e-41
SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans... 142 5e-35
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid... 121 1e-28
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran... 107 2e-24
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-... 79 7e-16
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 54 2e-08
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 31 0.19
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa... 29 1.0
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 27 2.3
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi... 26 7.1
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 25 9.4
>SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 162
Score = 228 bits (558), Expect = 6e-61
Identities = 100/150 (66%), Positives = 119/150 (79%)
Frame = -3
Query: 451 YFDISVNKQEIGRIIMMLRADIVPKTAENFRSLCTHEKGFGYQGSSFHRIIPEFMCQGGD 272
+FD+ N Q +GRI+ L D+VPKTA NFR+LCT EKG+GY GS+FHR+IP+FM QGGD
Sbjct: 5 FFDVIANGQPLGRIVFKLFDDVVPKTAANFRALCTGEKGYGYAGSTFHRVIPQFMLQGGD 64
Query: 271 FTNHNGTGGKSIYGRKFEDENFALKHTGPGVLSMANSGPNSNGSQFFLCTAKTEWLDGKH 92
FT NGTGGKSIYG KF DENFALKH PG+LSMAN+GPN+NGSQFF+ T T WLDGKH
Sbjct: 65 FTRGNGTGGKSIYGEKFPDENFALKHNKPGLLSMANAGPNTNGSQFFITTVVTPWLDGKH 124
Query: 91 VVFGHVISGLDVMKKMERYGSKSGTVSAKV 2
VVFG V G+DV+KK+E GS SG A++
Sbjct: 125 VVFGEVTEGMDVVKKVESLGSNSGATRARI 154
>SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 201
Score = 199 bits (485), Expect = 4e-52
Identities = 88/139 (63%), Positives = 107/139 (76%)
Frame = -3
Query: 454 VYFDISVNKQEIGRIIMMLRADIVPKTAENFRSLCTHEKGFGYQGSSFHRIIPEFMCQGG 275
VYFD+ + +GR+ + L VPKTAENFR+L T EKGFGY+GS FHR+IP FM QGG
Sbjct: 29 VYFDLQQGDEFLGRVTIGLFGKTVPKTAENFRALATGEKGFGYEGSIFHRVIPNFMIQGG 88
Query: 274 DFTNHNGTGGKSIYGRKFEDENFALKHTGPGVLSMANSGPNSNGSQFFLCTAKTEWLDGK 95
D T +GTGGKSIYG +F DENF L H PG+LSMAN+GP+SNGSQFF+ T KT WLDG
Sbjct: 89 DITKGDGTGGKSIYGSRFPDENFKLSHQRPGLLSMANAGPDSNGSQFFITTVKTPWLDGH 148
Query: 94 HVVFGHVISGLDVMKKMER 38
HVVFG V+SG D++KK+ +
Sbjct: 149 HVVFGEVLSGYDIVKKISK 167
>SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp3 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 173
Score = 163 bits (397), Expect = 2e-41
Identities = 80/147 (54%), Positives = 104/147 (70%), Gaps = 7/147 (4%)
Frame = -3
Query: 460 PQVYFDISVNKQEIGRIIMMLRADIVPKTAENFRSLCTHE------KGFGYQGSSFHRII 299
P V+ DI+++ + +GRI + L + IVPKTAENFR CT E K GY+ S+FHRII
Sbjct: 5 PVVFMDIAIDGRLLGRIKIRLFSSIVPKTAENFRQFCTGETLGVNQKPIGYKNSTFHRII 64
Query: 298 PEFMCQGGDFTNHNGTGGKSIYG-RKFEDENFALKHTGPGVLSMANSGPNSNGSQFFLCT 122
FM QGGDF + +GTG +I+ R F DENF LKH PG+LSMAN+G +SNG QFF+ T
Sbjct: 65 QGFMIQGGDFVSGDGTGSATIFNSRTFPDENFTLKHDRPGLLSMANAGKDSNGCQFFITT 124
Query: 121 AKTEWLDGKHVVFGHVISGLDVMKKME 41
++LDGKHVVFG VI G D++K++E
Sbjct: 125 VPCDFLDGKHVVFGEVIEGYDIVKEIE 151
>SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-trans
isomerase Wis2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 163 bits (396), Expect = 3e-41
Identities = 81/147 (55%), Positives = 100/147 (68%), Gaps = 4/147 (2%)
Frame = -3
Query: 451 YFDISVNKQEIGRIIMMLRADIVPKTAENFRSLCTHEKGFG----YQGSSFHRIIPEFMC 284
YF IS++ + I L ++VPKT +NF SLC + G Y+GS FHR+I FM
Sbjct: 6 YFKISIDGKIQPTIYFELFDNVVPKTVKNFASLCNGFEKDGRCLTYKGSRFHRVIKNFML 65
Query: 283 QGGDFTNHNGTGGKSIYGRKFEDENFALKHTGPGVLSMANSGPNSNGSQFFLCTAKTEWL 104
QGGDFT NGTGG+SIYG KFEDENF LKH P +LSMAN+GPN+NGSQFF+ T T L
Sbjct: 66 QGGDFTRGNGTGGESIYGEKFEDENFELKHDKPFLLSMANAGPNTNGSQFFITTVPTPHL 125
Query: 103 DGKHVVFGHVISGLDVMKKMERYGSKS 23
DGKHVVFG VI G ++ +E +K+
Sbjct: 126 DGKHVVFGKVIQGKSTVRTIENLETKN 152
>SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 142 bits (344), Expect = 5e-35
Identities = 69/127 (54%), Positives = 91/127 (71%), Gaps = 1/127 (0%)
Frame = -3
Query: 421 IGRIIMMLRADIVPKTAENFRSLCTHEKGFGYQGSSFHRIIPEFMCQGGDFTNHNGTGGK 242
+G+I++ L + PKT +NF +L ++G+ Y G FHR+IP+F+ QGGD T G GG
Sbjct: 10 LGKILIELYTEHAPKTCQNFYTLA--KEGY-YDGVIFHRVIPDFVIQGGDPTG-TGRGGT 65
Query: 241 SIYGRKFEDENFA-LKHTGPGVLSMANSGPNSNGSQFFLCTAKTEWLDGKHVVFGHVISG 65
SIYG KF+DE + L HTG G+LSMAN+GPN+N SQFF+ A T WLDGKH +FG V+SG
Sbjct: 66 SIYGDKFDDEIHSDLHHTGAGILSMANAGPNTNSSQFFITLAPTPWLDGKHTIFGRVVSG 125
Query: 64 LDVMKKM 44
L V K+M
Sbjct: 126 LSVCKRM 132
>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
peptidyl-prolyl cis-trans isomerase
Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 610
Score = 121 bits (291), Expect = 1e-28
Identities = 63/128 (49%), Positives = 82/128 (64%), Gaps = 1/128 (0%)
Frame = -3
Query: 418 GRIIMMLRADIVPKTAENFRSLCTHEKGFGYQGSSFHRIIPEFMCQGGDFTNHNGTGGKS 239
G I + L + PK +NF TH + Y + FHRII FM QGGD +GTGG+S
Sbjct: 464 GDISIKLYPEEAPKAVQNFT---THAENGYYDNTIFHRIIKNFMIQGGDPLG-DGTGGES 519
Query: 238 IYGRKFEDE-NFALKHTGPGVLSMANSGPNSNGSQFFLCTAKTEWLDGKHVVFGHVISGL 62
I+ + FEDE + LKH P +SMANSGPN+NGSQFF+ T T WLDGKH +F +GL
Sbjct: 520 IWKKDFEDEISPNLKHDRPFTVSMANSGPNTNGSQFFITTDLTPWLDGKHTIFARAYAGL 579
Query: 61 DVMKKMER 38
DV+ ++E+
Sbjct: 580 DVVHRIEQ 587
>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 516
Score = 107 bits (256), Expect = 2e-24
Identities = 57/133 (42%), Positives = 80/133 (60%), Gaps = 1/133 (0%)
Frame = -3
Query: 418 GRIIMMLRADIVPKTAENFRSLCTHEKGFGYQGSSFHRIIPEFMCQGGDFTNHNGTGGKS 239
G I + L D P NF L ++G+ Y+ + FHR I FM QGGD + G GG+S
Sbjct: 285 GEINIELHTDYAPHAVYNFVQLA--KQGY-YRNTIFHRNIARFMIQGGD-PSGTGRGGQS 340
Query: 238 IYGRKFEDENF-ALKHTGPGVLSMANSGPNSNGSQFFLCTAKTEWLDGKHVVFGHVISGL 62
I+G+ F+DE LKH G++SMAN G N+NGSQFF+ + LD KH +FG V+ GL
Sbjct: 341 IWGKPFKDEFCNPLKHDDRGIISMANRGKNTNGSQFFILYGPAKHLDNKHTIFGRVVGGL 400
Query: 61 DVMKKMERYGSKS 23
+V+ +E+ + S
Sbjct: 401 NVLDALEKVPTNS 413
>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 79.0 bits (186), Expect = 7e-16
Identities = 47/117 (40%), Positives = 63/117 (53%), Gaps = 1/117 (0%)
Frame = -3
Query: 418 GRIIMMLRADIVPKTAENFRSLCTHEKGFGYQGSSFHRIIPEFMCQGGDFTNHNGTGGKS 239
G I + L VPK NF LC +G+ Y G+ HR++PEF+ QGGD T G GG+S
Sbjct: 22 GDIQIELWCKEVPKACRNFIQLCL--EGY-YDGTIVHRVVPEFLIQGGDPTG-TGMGGES 77
Query: 238 IYGRKFEDENF-ALKHTGPGVLSMANSGPNSNGSQFFLCTAKTEWLDGKHVVFGHVI 71
IYG F E L+ G++ MA + N SQFF+ T +GK +FG V+
Sbjct: 78 IYGEPFAVETHPRLRFIRRGLVGMACTENEGNNSQFFITLGPTPEWNGKQTLFGRVV 134
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 54.0 bits (124), Expect = 2e-08
Identities = 43/141 (30%), Positives = 67/141 (47%), Gaps = 15/141 (10%)
Frame = -3
Query: 421 IGRIIMMLRADIVPKTAENFRSLCTHEKGFGYQGSSFHRIIPEFMCQGGDFTNHNGTGGK 242
+G +++ L PKT ENF LC K Y F+ I + CQ GD G GG+
Sbjct: 9 VGDLVIDLFVKEAPKTCENFLKLC---KLKYYNFCPFYNIQHNYTCQTGDPLGPTGDGGR 65
Query: 241 SIYG------RKFEDE-NFALKHTGPGVLSMANSGPNSN-------GSQFFLCTA-KTEW 107
++ R F+ E N +L H G++SM+ + +S GSQF + + E
Sbjct: 66 CVWNVLNKGTRFFKAEFNPSLVHNKMGLVSMSTATISSRDDKLLVCGSQFIITLSDNLEG 125
Query: 106 LDGKHVVFGHVISGLDVMKKM 44
LD ++ ++G V G D + K+
Sbjct: 126 LDERYPIYGQVAEGFDTLLKI 146
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 31.1 bits (67), Expect = 0.19
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +2
Query: 236 YRLSPSSVVIREVSSLTHEFWNDSMKATALVTETFLVCTQRSKVLRCFWDYVGSKH-HNY 412
+++ + V R VS + WN ++ L+T + L+ TQ + + F + G + HN
Sbjct: 287 FQIPELAAVHRPVSWFVIQLWNKTISNLQLITLSSLLSTQSDRWISLFLELQGLRALHNL 346
Query: 413 TAYF 424
YF
Sbjct: 347 LTYF 350
>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 639
Score = 28.7 bits (61), Expect = 1.0
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -2
Query: 482 ETDRETQSSSVFRHKCKQTRNRPY-NYDASSRHSPKNSGELS 360
ETDRET S RH + R + +D S R S + +G+ S
Sbjct: 17 ETDRETNHSRRHRHHHSRHRESKHGRHDRSERPSSREAGDRS 58
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 27.5 bits (58), Expect = 2.3
Identities = 16/57 (28%), Positives = 22/57 (38%)
Frame = -3
Query: 793 GDLVDVQIPLDYETEKHRGXXXXXXXXXXXXXXXXXXXXDSELFGRTIRVNIAAPQR 623
G +V++ IP D H G +LFG+ IRVN A+ R
Sbjct: 35 GPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQILNQVKLFGKPIRVNRASQDR 91
>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 798
Score = 25.8 bits (54), Expect = 7.1
Identities = 9/34 (26%), Positives = 19/34 (55%)
Frame = -3
Query: 142 SQFFLCTAKTEWLDGKHVVFGHVISGLDVMKKME 41
++ +C + W+DG +V GH + ++ M +E
Sbjct: 124 NEAMICDCRPHWVDGVNVACGHGSNCINRMTSIE 157
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.4 bits (53), Expect = 9.4
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +2
Query: 362 KVLRCFWDYVGSKHHNYTAYFLFVYTYVEIHLRIA 466
K+ + + + SKHH+ ++ V T +EIH ++A
Sbjct: 82 KLAKSYLETFQSKHHSPQSFSASVITSMEIHEQLA 116
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,240,425
Number of Sequences: 5004
Number of extensions: 67550
Number of successful extensions: 198
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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