Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11k18
         (795 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   1.1  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   2.5  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    23   3.3  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    23   4.3  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    23   4.3  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    22   5.7  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    22   7.5  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   7.5  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 11/45 (24%), Positives = 25/45 (55%)
 Frame = +1

Query: 661  QIVLNHSCYQSLRQHPQRFRTL*KRSPDASQSHNPXVFEHQPNPR 795
            +++++HS  ++ +Q PQ+ +   ++     QS  P   + QP P+
Sbjct: 1490 KLIVDHSSQKTQQQQPQQQQQQQQQQQPQQQSQQPQ--QQQPQPQ 1532


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 11/33 (33%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
 Frame = +1

Query: 697 RQHPQRFRT--L*KRSPDASQSHNPXVFEHQPN 789
           R++ +RF +  + +RSP +S+S +P +   QP+
Sbjct: 22  RRYSKRFSSSIVDRRSPSSSRSPSPSLLTSQPH 54


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 18/78 (23%), Positives = 33/78 (42%)
 Frame = -2

Query: 470 ETQSSSVFRHKCKQTRNRPYNYDASSRHSPKNSGELSIFVYTRERFRLPGQ*LSSNHSRI 291
           E ++S     + ++   + Y  +   R   + S E S     RER R P    S ++  I
Sbjct: 31  EERTSRKRYSRSREREQKSYKNERKYRKYRERSKERSRDRTERERSREPKIISSLSNKTI 90

Query: 290 HVSRRRLHESQRNWGKVY 237
           H +    + +  N+ K+Y
Sbjct: 91  HNNNNYNNNNYNNYKKLY 108


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 333 KPFSCVHKDRKFS 371
           KPFSC H +R F+
Sbjct: 69  KPFSCQHCNRAFA 81


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 19/78 (24%), Positives = 32/78 (41%)
 Frame = -2

Query: 470 ETQSSSVFRHKCKQTRNRPYNYDASSRHSPKNSGELSIFVYTRERFRLPGQ*LSSNHSRI 291
           E ++S     + ++   + Y  + S R   + S E S     RER R P    S ++  I
Sbjct: 31  EERTSRKRYSRSREREQKSYKNENSYRKYRETSKERSRDRTERERSREPKIISSLSNKTI 90

Query: 290 HVSRRRLHESQRNWGKVY 237
           H +    +    N  K+Y
Sbjct: 91  HNNNNYKYNYNNNCKKLY 108


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 333 KPFSCVHKDRKFSAV 377
           KP+ C H DR+F  V
Sbjct: 36  KPYHCSHCDRQFVQV 50


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 730 KRSPDASQSHNPXVFEHQPNP 792
           +R P+A   +N  V+  QP P
Sbjct: 117 RREPEAEPGNNRPVYIPQPRP 137



 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 730 KRSPDASQSHNPXVFEHQPNP 792
           +R P+A   +N  V+  QP P
Sbjct: 143 RREPEAEPGNNRPVYIPQPRP 163


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +1

Query: 673 NHSCYQSLRQHPQRFRTL*KRSPDASQSHNPXVFEHQPNPR 795
           + S  Q+LR      RT    SP   + +NP + + QP+P+
Sbjct: 405 SQSTIQTLRPQVSPDRT----SPMEYRLYNPALIQSQPSPQ 441


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,503
Number of Sequences: 438
Number of extensions: 4732
Number of successful extensions: 18
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)