Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11k17
(712 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|c... 42 9e-05
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 32 0.070
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po... 32 0.093
SPBC947.08c |||histone promoter control protein Hpc2 |Schizosacc... 31 0.16
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 31 0.16
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 31 0.16
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula... 30 0.38
SPBC543.10 |||GET complex subunit |Schizosaccharomyces pombe|chr... 30 0.38
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 29 0.87
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr... 28 1.1
SPAC3A12.13c |||translation initiation factor eIF3 complex subun... 28 1.1
SPAC589.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 28 1.1
SPBC23E6.05 |arx1||ribosomal export complex Arx1 |Schizosaccharo... 28 1.1
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce... 28 1.5
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 28 1.5
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc... 28 1.5
SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomy... 27 2.0
SPBC27B12.07 |||conserved fungal protein|Schizosaccharomyces pom... 27 2.6
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi... 27 2.6
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 27 2.6
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 27 3.5
SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha sub... 27 3.5
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 26 4.6
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 6.1
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta... 26 6.1
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa... 26 6.1
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 26 6.1
SPBC216.06c |swi1||replication fork protection complex subunit S... 26 6.1
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 25 8.1
SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr ... 25 8.1
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 25 8.1
SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces po... 25 8.1
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 25 8.1
>SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 240
Score = 41.9 bits (94), Expect = 9e-05
Identities = 18/64 (28%), Positives = 31/64 (48%)
Frame = -2
Query: 705 CGCVLAERALKEVRQNLCHMCQQPFTDNDIVVLNGTEEDIEKLKDKMAIRVSNRKNIKKN 526
CG V ALK+ + +C C Q + + D++ +N E ++ L ++ + K N
Sbjct: 124 CGHVFEYSALKQFGEKMCFQCNQVYEEKDVIPINPNAEQLKTLSKRLLDLALSEKTHSLN 183
Query: 525 KAEK 514
KA K
Sbjct: 184 KASK 187
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 32.3 bits (70), Expect = 0.070
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Frame = -2
Query: 705 CGCVLAERALKEVRQN----LCHMCQQPFTDNDI 616
CG L+E + R+N LCH C+QPF + D+
Sbjct: 898 CGDCLSEHIQYQKRRNIIPPLCHTCRQPFNEQDV 931
>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 549
Score = 31.9 bits (69), Expect = 0.093
Identities = 13/49 (26%), Positives = 26/49 (53%)
Frame = -3
Query: 266 HHTKRQRKITVLQKIQRPLMFTNHYLHHTKMRRNKREHIGSRTIHSTTD 120
H T R+ L+++ +FT H+L + K RR KR+ + ++ ++
Sbjct: 25 HGTSRRSATVSLERVHE--LFTEHWLSNLKNRREKRQELAEEAVYCRSE 71
>SPBC947.08c |||histone promoter control protein Hpc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 338
Score = 31.1 bits (67), Expect = 0.16
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Frame = -2
Query: 570 KMAIRVSNRKNIKKNK-AEKLEKSIIKTEINSGPSTSQDNPCKTAEKQST--EVKSEIKV 400
K A++ + R+N K K K E K++ + TS P KQST K +K+
Sbjct: 191 KNALKEAKRENAKVPKDVSKKEAKTTKSKEKATKKTSSSVP-----KQSTGENTKKAVKL 245
Query: 399 EAGTSSTKEIETIPLSLPKFNP 334
E +ST I PLS PK +P
Sbjct: 246 ETPLTSTPPIP--PLSEPKHSP 265
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 31.1 bits (67), Expect = 0.16
Identities = 47/188 (25%), Positives = 86/188 (45%), Gaps = 11/188 (5%)
Frame = -2
Query: 687 ERALKEVRQNLCHMCQQPFTDNDIVVLNGTEEDIEKLKDKMAIRVSNRKNIKKNKAEKLE 508
E + EVR+ L H TD + + + E+ IEKL + +SN+ ++ K ++LE
Sbjct: 101 EMTVSEVRR-LSHEVNDLQTDRENLK-HQFEDQIEKLNSE----ISNQNSLILQKKDELE 154
Query: 507 KSI-----IKTEIN---SGPSTSQDNPCKTAEKQSTEVKSEIKVEAGTSSTKEIETIPLS 352
KSI ++ +IN S S Q+ + ++ E K+++ E ST +TI +S
Sbjct: 155 KSIQRCSELEEKINSLESAQSIEQEVISSLKDDKTVETKNDVP-EVSRPST---DTIGVS 210
Query: 351 LPKFNPNKQPRGHFGSQKRAAPTEL---AQDPSYKKTKKDYSIAKDPKATDVYKSLFTSH 181
+ K+ R +K++ + ++ + ++ I K ++ DV T
Sbjct: 211 -SALSKKKKKRNRKNQKKKSTKQNIEATTENDALSESISTPDIQKVAQSEDVDAEQDTV- 268
Query: 180 KDEKEQER 157
D KE+ER
Sbjct: 269 ADSKEEER 276
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 31.1 bits (67), Expect = 0.16
Identities = 28/138 (20%), Positives = 57/138 (41%), Gaps = 9/138 (6%)
Frame = -2
Query: 594 EDIEKLKDKMAIRVSNRKNIKKNKAEKLEKSIIKTEINSGPSTSQDNPCKTAEKQSTEVK 415
+++ + D +SN +N + + ++++ + + P + T K++ ++
Sbjct: 360 DELVESDDSRTSALSNSQNPSDDVENQSDQALEVLSLTNPPKIDNASADTTLHKETNKID 419
Query: 414 ----SEIKVEAGTSSTKEIETIPLSLPKFNPNKQPRGHFGSQKRAAPTELAQDP-----S 262
SE K E+ +S + L+L P +P + K P A+D S
Sbjct: 420 KLYVSENKAESAVASESSLSEGTLALKAPAPENKPEKS-STSKPPVPENKAEDSVVLKSS 478
Query: 261 YKKTKKDYSIAKDPKATD 208
+ K + SIA P AT+
Sbjct: 479 VPEDKSENSIASKPSATE 496
>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
Prp45|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 29.9 bits (64), Expect = 0.38
Identities = 23/94 (24%), Positives = 38/94 (40%)
Frame = -2
Query: 597 EEDIEKLKDKMAIRVSNRKNIKKNKAEKLEKSIIKTEINSGPSTSQDNPCKTAEKQSTEV 418
E +EK D+ V+N+ + K L K I +++ S +D+P S ++
Sbjct: 135 EISLEKPSDEQKQEVANKTKLALQKI--LSKQIAQSQPKSAVVQQRDDPVYIRYTPSNQM 192
Query: 417 KSEIKVEAGTSSTKEIETIPLSLPKFNPNKQPRG 316
+ + E P+ PKF K PRG
Sbjct: 193 GQALSKQRIIKMVTA-EQDPMEPPKFRHKKVPRG 225
>SPBC543.10 |||GET complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 171
Score = 29.9 bits (64), Expect = 0.38
Identities = 19/45 (42%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Frame = -2
Query: 570 KMAIRVSNRKNIKKNKAEKLEKSI-IKTEINSGPSTSQDNPCKTA 439
++ + VSN K++KKNK E LE+ + +K E+N+ ++SQD K A
Sbjct: 32 RIYVSVSNNKDLKKNK-EILEQLLTVKKELNA--TSSQDQFAKWA 73
>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 615
Score = 28.7 bits (61), Expect = 0.87
Identities = 44/158 (27%), Positives = 64/158 (40%), Gaps = 14/158 (8%)
Frame = -2
Query: 591 DIEKLKD-KMAIRVSNRKNIKKNKAEKLEKSIIKTEINSGPSTSQDNPCK-TAEKQSTEV 418
+++K+ D K I VS + + E + KS + E ++ + P + T E STE+
Sbjct: 377 NLDKINDVKKNIEVSANEPQPRPVKEDVPKSQVGGETDTTDVINNSTPKEETEESPSTEL 436
Query: 417 ----------KSEIKVEAGTSSTKEIETIPLSLPKFN--PNKQPRGHFGSQKRAAPTELA 274
K+E V SSTK E S P+F+ PNK G A + L
Sbjct: 437 PETGKEQPPNKAEPAVPTEASSTKPSEAAEESTPRFSVRPNKFTGSRAGF-VAALESRLQ 495
Query: 273 QDPSYKKTKKDYSIAKDPKATDVYKSLFTSHKDEKEQE 160
+ P + + S K P T S TS KE E
Sbjct: 496 KGPLMRSFVPNKS--KSPSGTKSPASGETSEAGVKETE 531
>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 28.3 bits (60), Expect = 1.1
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = -2
Query: 534 KKNKAEKLEKSIIKTEINSGPSTSQD--NPCKTAEKQSTEVKSEIKVEAGTSSTKEIETI 361
KK +A + ++ SG + D NP + + +E +VEA TS K I++
Sbjct: 169 KKREANVFSDTQSAPQLKSGKALPADFENPYNLSNSKPVNNNNEDRVEAVTSENKSIDSA 228
Query: 360 P 358
P
Sbjct: 229 P 229
>SPAC3A12.13c |||translation initiation factor eIF3 complex
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 274
Score = 28.3 bits (60), Expect = 1.1
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -2
Query: 279 LAQDPSYKKTKKDYSIAKDPKATDVYKSLFTSHKDEKEQE 160
L +DP+ K + D+ + KD +++ K F +DE E+E
Sbjct: 8 LVEDPA-KPAEFDFPLGKDSQSSSKPKKRFDDEEDEDEEE 46
>SPAC589.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 168
Score = 28.3 bits (60), Expect = 1.1
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Frame = -2
Query: 624 NDIVVLNGTEEDIEKLKD-----KMAIRVSNRKNIKKNKAEKL--EKSIIKTEINSGPST 466
+DI L GTEED+E ++D ++ NRK KK+ + E ++ ++ ++
Sbjct: 75 HDIKELGGTEEDLELIEDVESDEELEFEEPNRKQPKKDGTDAFANELNLFAKKLGFSKNS 134
Query: 465 SQDNPCKTAEKQSTEVK 415
T + TE++
Sbjct: 135 FDARALDTESEDETEIE 151
>SPBC23E6.05 |arx1||ribosomal export complex Arx1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 417
Score = 28.3 bits (60), Expect = 1.1
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = -2
Query: 474 PSTSQDNPCKTAEKQSTEVKSEIKVEAGTSSTKEIETIPLSLPKFNPN 331
P+ S D C T + VKS+ +E GT + E I +++ N N
Sbjct: 369 PNPSSDLLCLTVPTPPSYVKSDFSLEDGTDAALICEGINVNIKSININ 416
>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1008
Score = 27.9 bits (59), Expect = 1.5
Identities = 31/128 (24%), Positives = 52/128 (40%), Gaps = 10/128 (7%)
Frame = -2
Query: 687 ERALKEVRQNLCHMCQQPFTDNDIVVLNGTEEDIEKLKDKMAIR---VSNRKNI------ 535
E+A+ E H P TD + +E DIE + M + VS+ I
Sbjct: 313 EKAVTEDAMKTEHASNAPLTDERHFQFHSSEGDIEGIVGTMQRQRQSVSSYDTIVPSQFY 372
Query: 534 KKNKAEKLEKSIIKTEINSGPSTSQDNPCKTAEKQSTEVKSEIKVEAGTSSTKEIETIPL 355
K+ + S++ T+ N P + D+P Q K+ + + T S+ + +P
Sbjct: 373 KQKVVQNSPPSLLSTD-NKIPESGSDHP----SSQDNSSKASLVENSQTQSSTPRKPLPT 427
Query: 354 SL-PKFNP 334
+ PK NP
Sbjct: 428 TTSPKVNP 435
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 27.9 bits (59), Expect = 1.5
Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 5/95 (5%)
Frame = -2
Query: 423 EVKSEIKVEAGTSSTKEIETIPLSLPKFNPNKQPRG-----HFGSQKRAAPTELAQDPSY 259
EV+ E+ ++ + + I FNP K P F S+++A P+Y
Sbjct: 975 EVRHELGLKTPLRPNSQYQEIVRPSRHFNPLKVPASLQAQLPFNSRQKALRPR--SKPTY 1032
Query: 258 KKTKKDYSIAKDPKATDVYKSLFTSHKDEKEQERA 154
+ + A++ K D+ + + T H D++ + +A
Sbjct: 1033 MQKRTVLLNAEERKVRDLLQKVMTLHTDKEAKRKA 1067
>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 379
Score = 27.9 bits (59), Expect = 1.5
Identities = 17/62 (27%), Positives = 31/62 (50%)
Frame = -2
Query: 411 EIKVEAGTSSTKEIETIPLSLPKFNPNKQPRGHFGSQKRAAPTELAQDPSYKKTKKDYSI 232
E++ EA + K+ L+L K++P+K P G ++ + E+ DP +K Y I
Sbjct: 12 EVRPEASEAELKKAYR-KLAL-KYHPDKNPNGEKKFKEISLAYEVLSDPQRRKLYDQYGI 69
Query: 231 AK 226
+
Sbjct: 70 TE 71
>SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 607
Score = 27.5 bits (58), Expect = 2.0
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = -2
Query: 414 SEIKVEAGTSSTKEIETIPLSLPKFNPNKQPRGHFGSQKRAAPTELAQDPSY 259
++ + +G S K+IE++ + L + N P +++ T L+QDP Y
Sbjct: 348 TDFGLSSGIISKKKIESMKIRLQEVNNVVVPERSMRERRQVFRTLLSQDPVY 399
>SPBC27B12.07 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 290
Score = 27.1 bits (57), Expect = 2.6
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -2
Query: 594 EDIEKLKDKMAIRVSNRKNIKKNKAEKLEKSIIK 493
E + KL + + NRKN KN+ ++L I++
Sbjct: 175 EQLNKLNTESKMEFENRKNDTKNEVQQLSARIVE 208
>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 606
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -2
Query: 606 NGTEEDIEKLKDKMAIRVSNRKNIKKNKAEKLEKSIIKTE 487
+GT + E K+K+ RV NRK I ++ L+ +I E
Sbjct: 476 DGTHKISEYTKEKLGTRVYNRKRIVSDRIPSLKFAIRAAE 515
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 27.1 bits (57), Expect = 2.6
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 9/77 (11%)
Frame = -2
Query: 711 WSCGCVLAE----RALKEVRQNLCHMCQQ-----PFTDNDIVVLNGTEEDIEKLKDKMAI 559
WS GC+L E +AL + ++ H+C PF N I + T + K K+
Sbjct: 563 WSIGCILVELFTGQALFQTHEDSEHLCMMEKILGPFDRNMISRSSRTSQRFFKSDGKVRY 622
Query: 558 RVSNRKNIKKNKAEKLE 508
+SN N + L+
Sbjct: 623 PLSNTPKKSINYLQSLQ 639
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 26.6 bits (56), Expect = 3.5
Identities = 29/116 (25%), Positives = 46/116 (39%), Gaps = 9/116 (7%)
Frame = -2
Query: 465 SQDNPCKTAEKQSTEVKSEIKVEAGTSSTKEIETIPLS--LPKFNPNKQPRGHFGSQKRA 292
S ++ T +Q EV+ I+ + KE+ P+S N ++ R +Q +
Sbjct: 797 SSESKQSTQHQQPVEVQKSIQSDVSAPKAKEVSEKPVSHQAKPSNASQLSRNTDDTQAKE 856
Query: 291 APTE--LAQDPSYKKTK--KDYSIAKDPKATDVYKSLFTSHK---DEKEQERAHWI 145
AP E + + S TK D + D V L + K DEK + A I
Sbjct: 857 APKEASIPDNASTASTKVSNDSHLKPDADKKSVSSELTHASKPSLDEKTMQLAKQI 912
>SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha
subunit Tfg1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 490
Score = 26.6 bits (56), Expect = 3.5
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -2
Query: 627 DNDIVVLNGTEEDIEKLKDKM 565
D + ++ G EED +KLKDK+
Sbjct: 274 DEEAPIMEGNEEDNKKLKDKI 294
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 26.2 bits (55), Expect = 4.6
Identities = 38/167 (22%), Positives = 69/167 (41%), Gaps = 7/167 (4%)
Frame = -2
Query: 627 DNDIVVLNGTEEDIEKLKDKMAIRVSNRK---NIKKNKAEKLEKSIIKTEINSGPSTSQD 457
DN+ E IEK K K A R RK +KK K ++ E S + ++ +D
Sbjct: 462 DNNANSSEKDETTIEKYKRKAAERKQRRKELRQLKKTKDDEGEGSDV--DLGFDDPFFKD 519
Query: 456 NPCKTAEKQSTEVKSEIKVEAGTSSTKEIETIPLSLPKFNPNKQPRGHFGSQKRAAPTEL 277
K++ + K ++E T+++KE E L N ++Q HF + +
Sbjct: 520 KDASRNNKKNKKGK-HTQIEDPTAASKE-ELENLVREDENDSEQ-LDHFDMKSILKAEKF 576
Query: 276 AQDPSYKKTKKDYSIAKDPKATDV----YKSLFTSHKDEKEQERAHW 148
++ KK + ++ DV + +L+T+H + H+
Sbjct: 577 KKNRKLKKKASNLEGLQEGFEADVSDPRFAALYTNHNFALDPTNPHF 623
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 25.8 bits (54), Expect = 6.1
Identities = 26/107 (24%), Positives = 49/107 (45%), Gaps = 1/107 (0%)
Frame = -2
Query: 687 ERALKEVRQNLCHMCQQPFTDNDIVVLNGTEEDIEKLKDKMAIRVSNRKNIKKNKAEKLE 508
E AL+E + L + ++ + + +NG E+D++K + + R+ + +K+ E+
Sbjct: 202 EAALEEFQSKL--LIRENEINKRELKMNGKEDDLKKREKDLENRLLKVEEHEKSLNERAT 259
Query: 507 KSIIKTEINSGPSTSQDNPCKTAEKQSTEVKSE-IKVEAGTSSTKEI 370
K E + + K+A KQ+ E SE K T KE+
Sbjct: 260 KLSEANENFNNRFKEFEEREKSAIKQNKEQSSEGSKTANQTHEQKEL 306
>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 25.8 bits (54), Expect = 6.1
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = -2
Query: 330 KQPRGHFGSQKRAAPTELAQDPSYKKTKKDYSIAKDPKATDVYKSL 193
K P+G G++K + +D KK KK+ + + PKA S+
Sbjct: 236 KAPKGLEGAKKEKQNKKEKKDKKDKKDKKEKAPKEPPKAATPVPSM 281
>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 759
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 222 DLLQYCNLSLSFCMMDPEPVQLGLLSF 302
D+ C L+L+ C EP+Q +LSF
Sbjct: 484 DVRNVCPLNLNVCCCIAEPIQSFILSF 510
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 25.8 bits (54), Expect = 6.1
Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Frame = -2
Query: 633 FTDNDIVVLNGTEEDIEKLKDKMAIRVSNRKNIKKNKAEKL---EKSIIKTEINSGPSTS 463
+ DN ++V++ +E D ++ K ++ ++ N+K+ + +L K E+ S P S
Sbjct: 181 WNDNAVIVVSDSESDDNNVRTKSSLNDHDKVNMKEKRNLELAFMNSKRKKLELPSLPVLS 240
Query: 462 QDNPCKT 442
P T
Sbjct: 241 TAGPSYT 247
>SPBC216.06c |swi1||replication fork protection complex subunit
Swi1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 971
Score = 25.8 bits (54), Expect = 6.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 323 LEDILDRKREQPQLNWLRIHHTKRQRK 243
L I DRKR++ + N I HT R++K
Sbjct: 878 LNKITDRKRKKMKTNETIIDHTTRKKK 904
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 25.4 bits (53), Expect = 8.1
Identities = 20/78 (25%), Positives = 35/78 (44%)
Frame = -2
Query: 537 IKKNKAEKLEKSIIKTEINSGPSTSQDNPCKTAEKQSTEVKSEIKVEAGTSSTKEIETIP 358
+K+ ++EK + + +S S++ +++ T S K G+S T E+
Sbjct: 1 MKRTRSEKTLSFLNPSRASSNTHLSREGTNRSSNV--TRTVSGRKSNHGSSLTDTGESDQ 58
Query: 357 LSLPKFNPNKQPRGHFGS 304
LSL F +QP H S
Sbjct: 59 LSLKSFGAIRQPSQHRSS 76
>SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 266
Score = 25.4 bits (53), Expect = 8.1
Identities = 19/71 (26%), Positives = 31/71 (43%)
Frame = -2
Query: 579 LKDKMAIRVSNRKNIKKNKAEKLEKSIIKTEINSGPSTSQDNPCKTAEKQSTEVKSEIKV 400
LK+K + I K A K ++ K + N+GPS E++S + S+ K
Sbjct: 17 LKEKSETVFLDEAAITKPPASKKKRKNRKKKKNNGPSEQFVGNNDLEEQRSGSIDSKDKE 76
Query: 399 EAGTSSTKEIE 367
+ KE+E
Sbjct: 77 KPLDEKVKELE 87
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 25.4 bits (53), Expect = 8.1
Identities = 13/49 (26%), Positives = 27/49 (55%)
Frame = -2
Query: 612 VLNGTEEDIEKLKDKMAIRVSNRKNIKKNKAEKLEKSIIKTEINSGPST 466
+++G+E+ + +D A+ ++N+K++ N L S T N PS+
Sbjct: 66 LVSGSEDVLPSPRD--ALNITNKKSVTDNLLLSLTSSNQSTNTNLNPSS 112
>SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 25.4 bits (53), Expect = 8.1
Identities = 10/49 (20%), Positives = 23/49 (46%)
Frame = -2
Query: 600 TEEDIEKLKDKMAIRVSNRKNIKKNKAEKLEKSIIKTEINSGPSTSQDN 454
+ + + K + + S +K+ KKN + + ++ PST++ N
Sbjct: 182 SSQSVASTMTKSSTKTSKKKSSKKNSKSESNQDSSNDRSSTAPSTAESN 230
>SPBC3F6.05 |rga1||GTPase activating protein
Rga1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1150
Score = 25.4 bits (53), Expect = 8.1
Identities = 7/13 (53%), Positives = 12/13 (92%)
Frame = +1
Query: 562 CHLVFQFFNVFLC 600
CH++++F+NV LC
Sbjct: 267 CHMIYKFWNVKLC 279
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,965,279
Number of Sequences: 5004
Number of extensions: 62583
Number of successful extensions: 280
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 280
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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