Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11k17
(712 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0585 - 4200230-4201282 50 2e-06
07_01_0745 + 5691926-5692095,5692654-5692735,5693256-5693334,569... 34 0.097
12_02_0338 - 17712076-17712261,17712339-17712431,17712533-177125... 33 0.30
05_03_0035 - 7592177-7592938 33 0.30
03_05_0791 + 27736978-27737217,27737648-27739191,27739512-277397... 32 0.52
10_08_0426 - 17817975-17818582,17819068-17819209,17819648-178197... 31 0.68
05_03_0070 - 8023343-8023528,8023606-8023639,8024013-8024058,802... 31 0.90
11_02_0133 + 8661030-8661141,8661727-8662031,8662158-8662331,866... 31 1.2
09_04_0087 + 14476539-14476675,14478876-14479635,14479720-144798... 31 1.2
05_03_0470 + 14448243-14448482,14448568-14449181,14449508-144501... 31 1.2
08_01_0781 + 7570485-7570796,7570808-7570885,7570963-7571562 30 1.6
05_06_0020 + 24976990-24977167,24978763-24978874,24979634-249797... 30 1.6
12_01_0079 + 644754-645932,645966-646061,646193-647122 30 2.1
11_01_0078 + 609005-610183,610217-610312,610444-611373 30 2.1
09_05_0008 + 20042390-20042845,20043323-20043457,20043539-200436... 30 2.1
06_03_0940 + 26145746-26145879,26146740-26146821,26147349-261474... 30 2.1
02_05_0491 + 29470575-29471351,29471574-29471806,29472697-294728... 29 2.8
03_01_0335 - 2649566-2649570,2649713-2650787 29 3.6
12_02_0800 + 23299674-23299678,23299714-23299791,23299876-232999... 29 4.8
10_07_0164 - 13724831-13725130,13725177-13725320 29 4.8
02_02_0340 + 9135846-9138377 29 4.8
01_06_0649 + 30861946-30862179,30862702-30862824,30863104-308631... 29 4.8
07_03_0335 - 16903775-16904118,16904203-16904325,16904424-16905993 28 6.4
08_02_0692 + 20080929-20081484,20081932-20081998,20082141-200824... 28 8.4
04_04_0775 - 27989704-27990281,27990407-27990653,27990743-279908... 28 8.4
>06_01_0585 - 4200230-4201282
Length = 350
Score = 50.0 bits (114), Expect = 2e-06
Identities = 24/65 (36%), Positives = 41/65 (63%)
Frame = -2
Query: 705 CGCVLAERALKEVRQNLCHMCQQPFTDNDIVVLNGTEEDIEKLKDKMAIRVSNRKNIKKN 526
CG VL+ +ALKEV+ + C +C + F + D + LNGTE+++ L+ +M R +K+
Sbjct: 212 CGHVLSVKALKEVKTSACLVCHKEFDEADKMPLNGTEDEVAALRLRME---EERGKVKEK 268
Query: 525 KAEKL 511
K +K+
Sbjct: 269 KEKKV 273
>07_01_0745 +
5691926-5692095,5692654-5692735,5693256-5693334,
5693452-5693543,5693895-5693982,5694099-5694208,
5694399-5694515,5694883-5695034,5699134-5699229,
5699308-5699383,5699481-5699534
Length = 371
Score = 34.3 bits (75), Expect = 0.097
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = -2
Query: 627 DNDIVVLNGTEEDIEKLKDKMAIRVSNRKNIKKNKAEKLEKSIIKTEINSGPSTSQDNPC 448
D+D VVL GT +D+ K ++ + ++ + + EK KTEI S + ++DN
Sbjct: 182 DSDAVVLIGTSKDLTKQINQKEVHWGILEDSLEERMEKAISDSDKTEIESKDADTEDNKA 241
Query: 447 KTA-EKQSTE 421
+ K+S+E
Sbjct: 242 RNCFVKRSSE 251
>12_02_0338 -
17712076-17712261,17712339-17712431,17712533-17712593,
17712681-17712791,17712872-17713123,17713207-17714543,
17714649-17715317,17715403-17715642
Length = 982
Score = 32.7 bits (71), Expect = 0.30
Identities = 24/112 (21%), Positives = 49/112 (43%), Gaps = 1/112 (0%)
Frame = -2
Query: 492 TEINSGPSTSQDNPCKTAEKQSTEVKSEIKVEAGTSSTK-EIETIPLSLPKFNPNKQPRG 316
T+ P ++NP + ++ +++ ++ + + +P+ + P Q
Sbjct: 520 TDKADDPEMQKENPVPEVPPEIALPEAAMEIAPPETAMEIPVPDVPMEITVAEPEVQFVA 579
Query: 315 HFGSQKRAAPTELAQDPSYKKTKKDYSIAKDPKATDVYKSLFTSHKDEKEQE 160
GS K P L D + + +D S AKDP+ V +S + KDE +++
Sbjct: 580 SVGSDKEEVPG-LEWDGTEPEIFEDPSPAKDPEVPRVLRSHDSKSKDENKEK 630
>05_03_0035 - 7592177-7592938
Length = 253
Score = 32.7 bits (71), Expect = 0.30
Identities = 28/109 (25%), Positives = 41/109 (37%), Gaps = 7/109 (6%)
Frame = -2
Query: 531 KNKAEKLEKSIIKTEINSGPSTSQDNPCKTAEKQS--TEVKSEIKVEAGTSSTKEIETIP 358
++KAE K K E P + + K E KSE K E + E + P
Sbjct: 108 ESKAEPESKPEPKAESTPQPEAKSEPKSEPKPKSEPYAEPKSEPKSEPQSEPNPETKAEP 167
Query: 357 LSLPKFNPNKQPRGHFGSQKRAAPTELAQDPSYKKT-----KKDYSIAK 226
S PK+ P +P + + P + S K +K YS +K
Sbjct: 168 KSEPKYEPKSEPTPQTEPRAESQPEPKTEPKSESKAEPKPERKSYSKSK 216
>03_05_0791 +
27736978-27737217,27737648-27739191,27739512-27739763,
27739844-27739954,27740042-27740102,27740373-27740558
Length = 797
Score = 31.9 bits (69), Expect = 0.52
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Frame = -2
Query: 411 EIKVE-AGTSSTKEIET--IPLSLPKFNPNKQPRGHFGSQKRAAPTELAQDPSYKKTKKD 241
E+ +E A +T EI +P+ + P Q GS K P L D + + +D
Sbjct: 470 EVAMEIAPPETTMEIPVPDVPMEITVAEPEVQFVASVGSDKEEVPG-LEWDGTEPEIFED 528
Query: 240 YSIAKDPKATDVYKSLFTSHKDEKEQE 160
S AKDP+ V +S + KDE +++
Sbjct: 529 PSPAKDPEVPRVLRSHDSKSKDENKEK 555
>10_08_0426 -
17817975-17818582,17819068-17819209,17819648-17819745,
17820070-17821897,17822331-17822738,17822891-17822943,
17823461-17823877,17824401-17824605
Length = 1252
Score = 31.5 bits (68), Expect = 0.68
Identities = 32/133 (24%), Positives = 54/133 (40%), Gaps = 6/133 (4%)
Frame = -2
Query: 534 KKNKAEKLEKSIIKTEINSGPSTSQDNPCKTAEKQSTEVKSEIKVEAGTSSTKEIETIPL 355
+ +AE + ++ GP+ DN K E TEV+ E K +A S E I +
Sbjct: 567 RATEAEYINDRQAPIKLEKGPANYCDNNEKHLESSDTEVEEEHKTKASDVSLDLQEDISV 626
Query: 354 SLPKFNPNKQPRGHFGSQKRAAPTELAQDPSYKKTKKDYSI-AKDPKATDVYKS-----L 193
+ N K + T++ ++ +K D S ++ +TDV+ S +
Sbjct: 627 DVHSSNAPKNFCKINKEDLDCSDTKM-EEQEHKTEASDTSADLQEEVSTDVHSSNEVGHI 685
Query: 192 FTSHKDEKEQERA 154
HKDE+ A
Sbjct: 686 LHKHKDEETVREA 698
>05_03_0070 -
8023343-8023528,8023606-8023639,8024013-8024058,
8024139-8024389,8024473-8026001,8026128-8026496,
8026582-8026821
Length = 884
Score = 31.1 bits (67), Expect = 0.90
Identities = 20/71 (28%), Positives = 33/71 (46%)
Frame = -2
Query: 372 IETIPLSLPKFNPNKQPRGHFGSQKRAAPTELAQDPSYKKTKKDYSIAKDPKATDVYKSL 193
+ +P+ + P Q GS K P L D + + +D S AKDP+ V +S
Sbjct: 525 VPDVPMEITVAEPEVQFVASVGSDKEEVPG-LEWDGTEPEIFEDPSPAKDPEVPRVLRSH 583
Query: 192 FTSHKDEKEQE 160
+ KDE +++
Sbjct: 584 DSKSKDENKEK 594
>11_02_0133 +
8661030-8661141,8661727-8662031,8662158-8662331,
8662469-8662783,8662886-8663456,8663474-8663786,
8663870-8663968,8664202-8664315,8664403-8664463,
8664565-8664657,8664742-8664927
Length = 780
Score = 30.7 bits (66), Expect = 1.2
Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 1/112 (0%)
Frame = -2
Query: 492 TEINSGPSTSQDNPCKTAEKQSTEVKSEIKVEAGTSSTK-EIETIPLSLPKFNPNKQPRG 316
T+ P ++NP + K+ +++ + + + +P+ + P Q
Sbjct: 374 TDKADDPEMQKENPVPEVPPEIALPKAAMEIAPPEIALEIPVPDVPMEITVAEPEVQFVA 433
Query: 315 HFGSQKRAAPTELAQDPSYKKTKKDYSIAKDPKATDVYKSLFTSHKDEKEQE 160
G K P L D + + +D S AKDP+ V +S + KDE +++
Sbjct: 434 SVGLDKEEVPG-LEWDGTEPEIFEDPSPAKDPEVPRVLRSHDSKSKDENKEK 484
>09_04_0087 +
14476539-14476675,14478876-14479635,14479720-14479871,
14479958-14480024,14480632-14480831,14480915-14481068,
14481585-14481669,14481766-14481857,14482575-14482766,
14482867-14482992,14483072-14483125,14483494-14483550,
14484509-14484606,14484703-14485038,14485116-14485203,
14486891-14487016,14487082-14487138,14488054-14488133,
14488228-14488270,14488948-14489034,14489331-14489420,
14489996-14490054,14490141-14490231,14490330-14490495,
14490662-14490755,14491787-14492909
Length = 1537
Score = 30.7 bits (66), Expect = 1.2
Identities = 21/91 (23%), Positives = 42/91 (46%)
Frame = -2
Query: 639 QPFTDNDIVVLNGTEEDIEKLKDKMAIRVSNRKNIKKNKAEKLEKSIIKTEINSGPSTSQ 460
+P +D +NG +K KDK + + K++K E+ EK K + + T +
Sbjct: 174 KPAQISDDQAVNGCNGSADK-KDKEEETEKDNEKEKEDKEEETEKDNEKEKEDKEEETKK 232
Query: 459 DNPCKTAEKQSTEVKSEIKVEAGTSSTKEIE 367
DN + + T+ K + K + + +++E
Sbjct: 233 DNEKEKEQLMGTDEKEKEKEKEDENEEEKLE 263
>05_03_0470 +
14448243-14448482,14448568-14449181,14449508-14450135,
14450217-14450827,14450911-14451162,14451243-14451353,
14451441-14451501,14451603-14451695,14451773-14451940
Length = 925
Score = 30.7 bits (66), Expect = 1.2
Identities = 20/68 (29%), Positives = 32/68 (47%)
Frame = -2
Query: 363 IPLSLPKFNPNKQPRGHFGSQKRAAPTELAQDPSYKKTKKDYSIAKDPKATDVYKSLFTS 184
+P+ + P Q GS K P L D + + +D S AKDP+ V +S +
Sbjct: 513 VPMEITVAEPEVQFVASVGSDKEEVPG-LEWDGTEPEIFEDPSPAKDPEVPRVLRSHDSK 571
Query: 183 HKDEKEQE 160
KDE +++
Sbjct: 572 SKDENKEK 579
>08_01_0781 + 7570485-7570796,7570808-7570885,7570963-7571562
Length = 329
Score = 30.3 bits (65), Expect = 1.6
Identities = 26/109 (23%), Positives = 48/109 (44%)
Frame = -2
Query: 540 NIKKNKAEKLEKSIIKTEINSGPSTSQDNPCKTAEKQSTEVKSEIKVEAGTSSTKEIETI 361
N KN+A K +K + T + + + K ST +KS + + ++ T
Sbjct: 141 NASKNRAFKFNHCWLKLRNSPKFQTLESHKRPRSRKSSTPIKSAGEEDEEGDDARKSTTP 200
Query: 360 PLSLPKFNPNKQPRGHFGSQKRAAPTELAQDPSYKKTKKDYSIAKDPKA 214
L P + K+P G ++++ + +D YK+ KD AK+ +A
Sbjct: 201 DLLQP--SAKKRPMGRKQAKEK---MKNGEDGPYKEAMKDLLDAKEKEA 244
>05_06_0020 +
24976990-24977167,24978763-24978874,24979634-24979722,
24979801-24979869,24979953-24980082,24980506-24980664,
24980767-24981127,24981343-24981452,24981753-24981909,
24983336-24983748,24983828-24984020,24984384-24986198
Length = 1261
Score = 30.3 bits (65), Expect = 1.6
Identities = 25/98 (25%), Positives = 50/98 (51%), Gaps = 3/98 (3%)
Frame = -2
Query: 603 GTEEDIEKLKDKMAIRVSNRKNIK-KNKAEKLEKSIIKTEINSGPSTSQDNPCKTAEKQS 427
G E ++ K K A + N + IK K + EK E I++ T+ D+ + KQ+
Sbjct: 443 GANEKDKRAKKKQAKQKKNNRKIKDKERDEKFEAKILE---RLHDETAIDDSDGLSSKQA 499
Query: 426 TEVKSEIK-VEAGTSSTK-EIETIPLSLPKFNPNKQPR 319
EV ++++ +E G S + ++++ ++ + +K PR
Sbjct: 500 EEVTTKVENLEEGASDRQGDLDSSEIAHRPDSGDKYPR 537
>12_01_0079 + 644754-645932,645966-646061,646193-647122
Length = 734
Score = 29.9 bits (64), Expect = 2.1
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Frame = -2
Query: 597 EEDIEKLKDKMAIRVSNRKNIKKNKAEKLEKSIIKTEINSGPSTSQDNPCKTAEKQSTEV 418
EE+ K +++MA V R+ ++ KAE E+S T + + +P K E++ E
Sbjct: 232 EEEERKQREEMAKLVEERRRLRDEKAEAEERSKGATPV------GEKDPRKEVERRRQER 285
Query: 417 KSEIKVEAGTS-STKEIETI 361
+ + + + G+S S + E I
Sbjct: 286 RRKDEKDKGSSKSNSDCEDI 305
>11_01_0078 + 609005-610183,610217-610312,610444-611373
Length = 734
Score = 29.9 bits (64), Expect = 2.1
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Frame = -2
Query: 597 EEDIEKLKDKMAIRVSNRKNIKKNKAEKLEKSIIKTEINSGPSTSQDNPCKTAEKQSTEV 418
EE+ K +++MA V R+ ++ KAE E+S T + + +P K E++ E
Sbjct: 232 EEEERKQREEMAKLVEERRRLRDEKAEAEERSKGATPV------GEKDPRKEVERRRQER 285
Query: 417 KSEIKVEAGTS-STKEIETI 361
+ + + + G+S S + E I
Sbjct: 286 RRKDEKDKGSSKSNSDCEDI 305
>09_05_0008 +
20042390-20042845,20043323-20043457,20043539-20043679,
20043771-20043882,20044084-20044154,20044251-20044405,
20044484-20044595,20044932-20045033,20045116-20045176,
20045251-20045422,20045512-20045608,20045692-20045786,
20045881-20046014,20046208-20046422
Length = 685
Score = 29.9 bits (64), Expect = 2.1
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Frame = -2
Query: 606 NGTEEDIEKLKD-KMAIRVSNRKNIKKNKAEKLEK----SIIKTEINSGPSTSQDNPCKT 442
+ +++ KLK ++ + S+RK KK K K ++ S +E STS D P
Sbjct: 6 SASKKSKRKLKAAEVEVEASSRKKEKKEKKRKAKEPSPSSSSSSEEEERSSTSSDEPAPA 65
Query: 441 AEKQSTE-VKSEIKVE 397
A+K E K ++ VE
Sbjct: 66 AKKAKKEKTKEKVVVE 81
>06_03_0940 +
26145746-26145879,26146740-26146821,26147349-26147427,
26147527-26147624,26148392-26148479,26148589-26148686,
26148881-26148982,26149237-26149281,26150535-26150574,
26150988-26151074,26151254-26151330,26151746-26151808,
26152650-26152766,26152905-26153116,26153690-26153785,
26153869-26153935,26154028-26154081
Length = 512
Score = 29.9 bits (64), Expect = 2.1
Identities = 23/77 (29%), Positives = 45/77 (58%), Gaps = 6/77 (7%)
Frame = -2
Query: 627 DNDIVVLNGTEEDIEKLKDKMAIRVSNRKNIKKNKAEKLEKSII---KTEINSGPSTSQD 457
D D+V L GT++D+ K +++ ++ ++ + E++EK+++ KTE S + ++D
Sbjct: 172 DTDVVALVGTKKDLAK-------QINLKELLEDSVEERMEKTLLESDKTEAESKDADAED 224
Query: 456 -NPCKTAE--KQSTEVK 415
N K++E KQ VK
Sbjct: 225 NNKRKSSEGGKQGGSVK 241
>02_05_0491 + 29470575-29471351,29471574-29471806,29472697-29472856,
29473149-29473394,29473492-29473628,29473874-29474207,
29474283-29474444,29474717-29474791,29474866-29474966,
29475042-29475111,29475210-29475266,29475357-29475418,
29475505-29475577,29475663-29475884
Length = 902
Score = 29.5 bits (63), Expect = 2.8
Identities = 21/64 (32%), Positives = 34/64 (53%)
Frame = -2
Query: 600 TEEDIEKLKDKMAIRVSNRKNIKKNKAEKLEKSIIKTEINSGPSTSQDNPCKTAEKQSTE 421
+EE EK+ D + +VS+ I K K K+EK K E ++ + + ++ E +STE
Sbjct: 816 SEEVYEKVLD-LQDKVSSVNRIPKPKP-KIEKKPPKEEESANKEKTDSSESESKEAESTE 873
Query: 420 VKSE 409
SE
Sbjct: 874 TSSE 877
>03_01_0335 - 2649566-2649570,2649713-2650787
Length = 359
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = -2
Query: 615 VVLNGTEEDIEKLKDKMAIRVSNRKNIKKNKAEKLEKSIIKTEINSG 475
VVL+ T+ED+ + K K ++R+ +++ K A K + IN G
Sbjct: 313 VVLSQTDEDMTEEKKKKSLRLMEKEDKKVADAAAERKEALNAFINKG 359
>12_02_0800 + 23299674-23299678,23299714-23299791,23299876-23299920,
23300052-23300415,23300493-23300574,23300793-23300873,
23300974-23302106,23302202-23302350,23302426-23302516,
23303628-23305940
Length = 1446
Score = 28.7 bits (61), Expect = 4.8
Identities = 30/131 (22%), Positives = 54/131 (41%)
Frame = -2
Query: 561 IRVSNRKNIKKNKAEKLEKSIIKTEINSGPSTSQDNPCKTAEKQSTEVKSEIKVEAGTSS 382
+ ++ +N+ K K ++E+ + K ++ +EK E K K S+
Sbjct: 1041 LNTNDGENVTKTKRAEMERYVPKP-LSKELQQQNLRQILPSEKSCEENKIRDKEIVERST 1099
Query: 381 TKEIETIPLSLPKFNPNKQPRGHFGSQKRAAPTELAQDPSYKKTKKDYSIAKDPKATDVY 202
+ ET P K+ K +GH S PS+++ D S PKAT++
Sbjct: 1100 GAKPETAP-EAKKWEGKKTSKGHGKSH-----------PSWRRRNTDESTLVGPKATELA 1147
Query: 201 KSLFTSHKDEK 169
+ SH+ +K
Sbjct: 1148 DNYQESHELQK 1158
>10_07_0164 - 13724831-13725130,13725177-13725320
Length = 147
Score = 28.7 bits (61), Expect = 4.8
Identities = 24/71 (33%), Positives = 30/71 (42%)
Frame = -2
Query: 408 IKVEAGTSSTKEIETIPLSLPKFNPNKQPRGHFGSQKRAAPTELAQDPSYKKTKKDYSIA 229
++ ++G TKE ETI K G G K AAP+ L PS Y A
Sbjct: 38 VQEDSGNKRTKE-ETISKEKRPDGQKKAKAGLKGKGKDAAPSPLGNQPSQNMIL--YHEA 94
Query: 228 KDPKATDVYKS 196
KAT + KS
Sbjct: 95 MSLKATAMIKS 105
>02_02_0340 + 9135846-9138377
Length = 843
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -3
Query: 233 LQKIQRPLMFTNHYLHHTKMRRNK 162
+++I+R LMF LHH + RR+K
Sbjct: 37 MEQIKRDLMFMQGLLHHARERRDK 60
>01_06_0649 +
30861946-30862179,30862702-30862824,30863104-30863197,
30863819-30863901,30863984-30864073,30864176-30864562,
30864903-30864991,30867801-30867907,30868431-30868822
Length = 532
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = -1
Query: 235 YCKRSKGH*CLQIIIYITQR*EGTRESTLDHVQSILQLTLV--TEWSPVILESLFT 74
+CK +G ++ Y+ + + E+ LDHV+SI L+ ++W V + S T
Sbjct: 162 HCKAGRGRSTTIVLCYLIKYRSMSPEAALDHVRSIRPRVLLAPSQWQAVNVFSTLT 217
>07_03_0335 - 16903775-16904118,16904203-16904325,16904424-16905993
Length = 678
Score = 28.3 bits (60), Expect = 6.4
Identities = 19/100 (19%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Frame = -2
Query: 630 TDNDIVVLNGTEEDIEKLKDKMAIRVSNRKNIKKNKAEKL--EKSIIKTEINSGPSTSQD 457
+D+DI + G D E+ ++ + +S +++ + + +I E + S D
Sbjct: 442 SDDDISLPGGNINDREEAQENGNLNLSQNASLEDPSVIEYPHQMEMISNEFHQLSPHSND 501
Query: 456 NPCKTAEKQSTEVKSEIKVEAGTSSTKEIETIPLSLPKFN 337
N ++ ++TE +E + + I IP++ P ++
Sbjct: 502 NDSLSSSTEATEPPELNSIELPANEVEFINEIPIADPIYD 541
>08_02_0692 +
20080929-20081484,20081932-20081998,20082141-20082474,
20082835-20083068,20083158-20083319
Length = 450
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/92 (18%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Frame = -2
Query: 639 QPFTDNDIVVLNGTEEDIEKLKDKMAIRVSNRKNIKKNKAEKLEKSIIKTEINSGPSTSQ 460
+P+ D + + N D D ++ N+K ++ NK+ ++ I K +
Sbjct: 334 EPYEDKENIDPNAQHGD-----DLLSATQLNKKEVQSNKSRRIRTWIDKLRKGKRNNPKS 388
Query: 459 DNPCKTAEKQSTEVKSEIKV-EAGTSSTKEIE 367
P K K++ ++ +++V + G+ +++E
Sbjct: 389 AKPTKKGVKKNDALQPQVQVKDDGSHKERDVE 420
>04_04_0775 -
27989704-27990281,27990407-27990653,27990743-27990837,
27990918-27992388,27993142-27993194,27993295-27993430
Length = 859
Score = 27.9 bits (59), Expect = 8.4
Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Frame = -2
Query: 588 IEKLKDKMAIRVSN-RKNIKKNKAEKLEKSIIKTEINSGPSTSQDNP-CKTAEKQSTEVK 415
+ +LK ++ + +SN RK++ + +K + + + I STS D+ C+ AEK S K
Sbjct: 352 LRELKRRLRLAISNNRKDVMSSTFQKDDST--QQFILESMSTSMDSSECEKAEKPSIVDK 409
Query: 414 SEIKVEAGT 388
I ++G+
Sbjct: 410 KTIPEDSGS 418
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,245,016
Number of Sequences: 37544
Number of extensions: 365066
Number of successful extensions: 1152
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1152
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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