Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11k17
         (712 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        25   0.71 
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        25   0.71 
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        25   0.71 
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    24   1.6  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    24   1.6  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    24   1.6  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    24   1.6  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   2.9  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    22   6.6  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 25.0 bits (52), Expect = 0.71
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 684 RALKEVRQNLCHMCQQP 634
           R LKE   N+C +C++P
Sbjct: 209 RRLKETYSNMCALCEKP 225


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 25.0 bits (52), Expect = 0.71
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 684 RALKEVRQNLCHMCQQP 634
           R LKE   N+C +C++P
Sbjct: 209 RRLKETYSNMCALCEKP 225


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 25.0 bits (52), Expect = 0.71
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 684 RALKEVRQNLCHMCQQP 634
           R LKE   N+C +C++P
Sbjct: 209 RRLKETYSNMCALCEKP 225


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = -2

Query: 555 VSNRKNIKKNKAEKLEKSIIKTEINSGPSTSQDNPCKTAEKQSTEVKSEI 406
           ++ R  ++KN+ +K+ +S+     N GP     +    A KQ TEV+ ++
Sbjct: 307 MAKRIQMRKNRFQKIAESMKTARENPGPPGVPGDHGDHAPKQ-TEVRFKV 355


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = -2

Query: 555 VSNRKNIKKNKAEKLEKSIIKTEINSGPSTSQDNPCKTAEKQSTEVKSEI 406
           ++ R  ++KN+ +K+ +S+     N GP     +    A KQ TEV+ ++
Sbjct: 307 MAKRIQMRKNRFQKIAESMKTARENPGPPGVPGDHGDHAPKQ-TEVRFKV 355


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 12/44 (27%), Positives = 19/44 (43%)
 Frame = -3

Query: 260 TKRQRKITVLQKIQRPLMFTNHYLHHTKMRRNKREHIGSRTIHS 129
           T R     VL +  R    T +Y +H   + +  EH+  +  HS
Sbjct: 368 TNRYSSGRVLMRTVRGKEKTCYYPYHPSTQEDSEEHLTPKRFHS 411


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 12/44 (27%), Positives = 19/44 (43%)
 Frame = -3

Query: 260 TKRQRKITVLQKIQRPLMFTNHYLHHTKMRRNKREHIGSRTIHS 129
           T R     VL +  R    T +Y +H   + +  EH+  +  HS
Sbjct: 368 TNRYSSGRVLMRTVRGKEKTCYYPYHPSTQEDSEEHLTPKRFHS 411


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = -2

Query: 555 VSNRKNIKKNKAEKLEKSIIKTEINSGPSTSQDNPCKTAEKQSTEVK 415
           ++ R  ++KN+ +K+ +S+     N GP     +    A KQ+   K
Sbjct: 246 MAKRIQMRKNRFQKIAESMKTARENPGPPGVPGDHGDHAPKQTVRFK 292


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 11/44 (25%), Positives = 18/44 (40%)
 Frame = -3

Query: 272 RIHHTKRQRKITVLQKIQRPLMFTNHYLHHTKMRRNKREHIGSR 141
           R HH K   ++   +K          ++    +RR+ R H G R
Sbjct: 21  RDHHLKTHMRLHTGEKPYHCSHCDRQFVQVANLRRHLRVHTGER 64


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,345
Number of Sequences: 438
Number of extensions: 4469
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)