Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11k16
         (348 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    27   1.1  
SPAC1002.16c |||nicotinic acid plasma membrane transporter |Schi...    26   1.9  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    25   3.4  
SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ...    25   4.4  
SPAC24C9.02c |||cytochrome c1 heme lyase|Schizosaccharomyces pom...    25   4.4  
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos...    25   4.4  
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    24   5.9  
SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|c...    24   5.9  
SPBC29A10.11c |vps902|vps9b|guanyl-nucleotide exchange factor Vp...    24   7.8  
SPAC24C9.16c |cox8||cytochrome c oxidase subunit VIII|Schizosacc...    24   7.8  

>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -2

Query: 173 ENLPFDIHNRYKLTLYFILYAGSGLSAPYL 84
           E   F+++N Y LTL+ I++      AP++
Sbjct: 472 EKRSFEVNNMYSLTLFDIIFKSGMKIAPFI 501


>SPAC1002.16c |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +1

Query: 208 KFVTTFLPSLFEMRVSGVIIFTFLRFSSRYHSKKQKFDFANSTVGI 345
           K++   L SL  + +S V+    + F    +SKKQK   ++ST+ +
Sbjct: 438 KYIAGHLTSLIAIFISTVLHVVNIFFLKHQNSKKQKSLASSSTIDL 483


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 138 LVTVVNVEG*ILARNTAVRMVSHEIRYHISTQFV 239
           L+T  NV   +L R+  V ++  E  YHI  Q +
Sbjct: 233 LITGANVNTYLLERSRVVSLLKGERNYHIFYQLI 266


>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 621

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 193 EWFLTKFVTTFLPSLFEMR 249
           +WF TK  +  LPS+F++R
Sbjct: 16  KWFNTKLSSRDLPSVFDLR 34


>SPAC24C9.02c |||cytochrome c1 heme lyase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 216

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -2

Query: 275 NVKMITPLTRISNKLGRN 222
           NVK +TP  RI N LG N
Sbjct: 134 NVKKLTPKARILNLLGYN 151


>SPBC11B10.05c |rsp1||random septum position protein
           Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 494

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -2

Query: 296 YLLENRRNVKMITPLTRISNKLGRNVVTN 210
           YL   R   +  TPL+ ISN L  N V N
Sbjct: 214 YLESLREKRRTYTPLSEISNGLNSNGVEN 242


>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 146 RYKLTLYFILYAGSGLS 96
           RY+LTLY +LY  S +S
Sbjct: 525 RYRLTLYIMLYTLSQIS 541


>SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 438

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 221 VVTNFVRNHSNGGIPGENLPF 159
           +    +RN ++ G P ENLPF
Sbjct: 204 IALQMIRNINDLGTPDENLPF 224


>SPBC29A10.11c |vps902|vps9b|guanyl-nucleotide exchange factor
           Vps902 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 402

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -3

Query: 133 HCISSYMRALDYQHPISSPVTSF*RSNSSCRN 38
           H +S    ALD QH   S + +F   NSS  N
Sbjct: 174 HEVSEAFFALDEQHTPRSKINTFMTVNSSILN 205


>SPAC24C9.16c |cox8||cytochrome c oxidase subunit
           VIII|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 66

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -2

Query: 179 PGENLPFDIHNRYKLTLYFILYAGSGLSAPYLITRH 72
           PG  +PF I+ +   TL +    G   S P+++ ++
Sbjct: 26  PGSTIPFYINKKPLPTLLYFGTFGVIFSIPFIVVKY 61


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,429,425
Number of Sequences: 5004
Number of extensions: 27939
Number of successful extensions: 91
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)