Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11k15
         (643 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1...    27   2.3  
SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       27   3.0  
SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch...    26   4.0  
SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit Ssr2|Schizosa...    26   4.0  
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.3  

>SPBC947.11c |elg1||DNA replication factor C complex subunit
           Elg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 920

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +2

Query: 506 SNDISYKNCLSRTTVNNIMEMYKSIKSGVNNVLIKKHFNSSLNDLC 643
           ++ +S+K  LS TT N I  + +  K+ V  V   K    +L  LC
Sbjct: 245 TSHLSFKEVLSSTTANMITPLAEKNKTEVLQVTPSKLHTFALESLC 290


>SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 105

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = -2

Query: 633 FKLELKCFFINTLLTPDLIDLYISIILFTVVLDKQFL*EISLLV 502
           + ++++CFF+    TP     +  I+ + +++  Q L EI  L+
Sbjct: 27  YAIQIRCFFLTVNRTPIPKQTFSLIVFYILIMIIQHLKEIHYLI 70


>SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 425

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 467 YVTISISLHIHRTSNDISYKNCLSRTTVNNIMEM 568
           Y T S  L + +TS+DIS  NC  + T    +E+
Sbjct: 234 YSTNSEMLDLSKTSSDISCPNCNDQLTSTTAIEV 267


>SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit
           Ssr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 503

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +1

Query: 379 NSLEFLYCNDIIYSNHNRSKKKNNIDTCILCYDLDFFTYSSNQ 507
           NS +FL C D I  NH+  K  +N +T +L   ++ +    NQ
Sbjct: 230 NSSDFL-CMDAIDFNHDEEKPWSNQETLLLLEAIETYGDDWNQ 271


>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 575

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -3

Query: 470 HKIQVSILFFFLLRLWFEYIISLQYKNSSEFYE 372
           + I+++  F  +L  WF+ II  ++ N+  FY+
Sbjct: 475 YNIEIAYYFTDVLLKWFQPIIRYEFDNALIFYK 507


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,362,526
Number of Sequences: 5004
Number of extensions: 46326
Number of successful extensions: 87
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)