Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11k14
         (287 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    25   1.7  
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    24   5.0  
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    23   8.8  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    23   8.8  

>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 25.4 bits (53), Expect = 1.7
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -2

Query: 106  NDVNFLVEIISHKLTSLSIYFIRYLSMYLM*SKQI 2
            ND+   +E+I H+ T L+  FI +   + +  KQ+
Sbjct: 1404 NDILDALEVIGHEQTDLNHIFINFTPAFGLAPKQV 1438


>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 23.8 bits (49), Expect = 5.0
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -1

Query: 287 KTKAWRFLHLMKRDLWYLIITES*RQNYHHHHR 189
           KT+  + +   +R L  LI   S  +++HHHH+
Sbjct: 455 KTEKEKKMSAPRRSLDKLIRIGSLHRHHHHHHK 487


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 10/29 (34%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +2

Query: 62  RQLMANNFN*EV-YIILPHYFKT*SFKNP 145
           R+L   ++N ++  ++ PHY  T S +NP
Sbjct: 14  RRLKIRDWNHKIGAVVAPHYSPTLSIRNP 42


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -2

Query: 100  VNFLVEIISHKLTSLSIYFI 41
            + FL E +SH+L  L++Y++
Sbjct: 1262 MKFLREKLSHELKELTVYYM 1281


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 987,300
Number of Sequences: 5004
Number of extensions: 14909
Number of successful extensions: 40
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 67723590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)