Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11k14
(287 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0012 - 70296-70398,70494-70648,70737-70843,71138-71216,713... 28 1.4
02_01_0548 + 4035265-4035431,4035517-4035651,4035859-4036081,403... 27 3.2
04_04_0946 - 29579779-29580004,29580098-29580210 23 3.4
04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355 26 4.2
02_02_0310 - 8842286-8843314 26 4.2
12_02_1154 - 26540090-26540653 23 7.1
06_02_0034 - 10800691-10802215,10802294-10802828,10802902-10803397 25 7.4
03_02_0869 - 11944309-11945004,11945522-11945838,11945933-11946098 25 7.4
04_01_0452 - 5859262-5859465,5859618-5859661,5859753-5859954,586... 25 9.8
03_05_0301 + 22928864-22929787 25 9.8
01_06_1582 - 38430573-38430599,38430750-38430857,38431503-384315... 25 9.8
01_05_0098 - 18088331-18088376,18088703-18088935,18089078-180892... 25 9.8
>05_01_0012 -
70296-70398,70494-70648,70737-70843,71138-71216,
71343-71423,71556-72581
Length = 516
Score = 27.9 bits (59), Expect = 1.4
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = -1
Query: 284 TKAWRFLHLMKRDLWYLIITES*RQNYHHHHRRSQHFVDLVASIKRQ 144
T+ R LH KR + + E +N+HHHH H + V +RQ
Sbjct: 248 TRFRRGLHARKR-IMAALREEMAARNHHHHHHHHHHDLLSVLMQRRQ 293
>02_01_0548 +
4035265-4035431,4035517-4035651,4035859-4036081,
4036282-4036468,4036627-4036811,4037435-4037572,
4037995-4038123
Length = 387
Score = 26.6 bits (56), Expect = 3.2
Identities = 9/40 (22%), Positives = 23/40 (57%)
Frame = -1
Query: 266 LHLMKRDLWYLIITES*RQNYHHHHRRSQHFVDLVASIKR 147
+ +M+ D+ YL+ E + ++ R ++HF+ ++ +R
Sbjct: 174 VEVMENDVLYLVSLEGQKTGFYADQRENRHFISTLSKDQR 213
>04_04_0946 - 29579779-29580004,29580098-29580210
Length = 112
Score = 23.4 bits (48), Expect(2) = 3.4
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = -1
Query: 254 KRDLWYLIITES*RQNYHHHHR 189
KR + + +N+HHHHR
Sbjct: 64 KRAAAHAVSVRKEHRNHHHHHR 85
Score = 21.8 bits (44), Expect(2) = 3.4
Identities = 6/9 (66%), Positives = 6/9 (66%)
Frame = -1
Query: 203 HHHHRRSQH 177
HHHH R H
Sbjct: 80 HHHHHRHHH 88
>04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355
Length = 1109
Score = 26.2 bits (55), Expect = 4.2
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -1
Query: 215 RQNYHHHHRRSQ 180
RQ +HHHH+R Q
Sbjct: 146 RQRHHHHHQRQQ 157
>02_02_0310 - 8842286-8843314
Length = 342
Score = 26.2 bits (55), Expect = 4.2
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -1
Query: 215 RQNYHHHHRRSQHFVD 168
R+++HHHHR H D
Sbjct: 184 RRSHHHHHRHHHHHHD 199
>12_02_1154 - 26540090-26540653
Length = 187
Score = 22.6 bits (46), Expect(2) = 7.1
Identities = 6/9 (66%), Positives = 9/9 (100%)
Frame = -1
Query: 209 NYHHHHRRS 183
++HHHHRR+
Sbjct: 15 HHHHHHRRA 23
Score = 21.4 bits (43), Expect(2) = 7.1
Identities = 6/10 (60%), Positives = 8/10 (80%)
Frame = -1
Query: 215 RQNYHHHHRR 186
R ++HHHH R
Sbjct: 12 RVHHHHHHHR 21
>06_02_0034 - 10800691-10802215,10802294-10802828,10802902-10803397
Length = 851
Score = 25.4 bits (53), Expect = 7.4
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +3
Query: 159 RDQIYEVLAPAVVMMVILSLALCYYQ 236
+ IY + AVV+ +++ L +C+YQ
Sbjct: 641 KTSIYVFVLVAVVLFIMIILLVCFYQ 666
>03_02_0869 - 11944309-11945004,11945522-11945838,11945933-11946098
Length = 392
Score = 25.4 bits (53), Expect = 7.4
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -1
Query: 230 ITES*RQNYHHHHRRSQH 177
+ E RQ HHHH++ QH
Sbjct: 268 LQEMARQPDHHHHQQQQH 285
>04_01_0452 -
5859262-5859465,5859618-5859661,5859753-5859954,
5860905-5860949
Length = 164
Score = 25.0 bits (52), Expect = 9.8
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +3
Query: 102 SFSRTILKHNLLKILAFYGRDQI 170
SFSRT+ N L L + GR QI
Sbjct: 50 SFSRTVYNINTLSNLVYVGRVQI 72
>03_05_0301 + 22928864-22929787
Length = 307
Score = 25.0 bits (52), Expect = 9.8
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = -1
Query: 215 RQNYHHHHRRSQH 177
+Q +HHHH R H
Sbjct: 280 QQQHHHHHHRHHH 292
>01_06_1582 -
38430573-38430599,38430750-38430857,38431503-38431569,
38431847-38432070,38432154-38432246,38432665-38432717,
38433122-38433572
Length = 340
Score = 25.0 bits (52), Expect = 9.8
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -1
Query: 215 RQNYHHHHRRSQH 177
R+ HHHHRR+ H
Sbjct: 34 RRGRHHHHRRAFH 46
>01_05_0098 -
18088331-18088376,18088703-18088935,18089078-18089203,
18089387-18089494,18089646-18089709,18090256-18090409,
18090551-18090671,18091095-18091472
Length = 409
Score = 25.0 bits (52), Expect = 9.8
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = -1
Query: 206 YHHHHRRSQH 177
+HHHH+R QH
Sbjct: 14 HHHHHQRRQH 23
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,886,647
Number of Sequences: 37544
Number of extensions: 83718
Number of successful extensions: 298
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 285
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 304131700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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