Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11k11
         (833 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0105 - 41104655-41104851,41105818-41107150                       30   2.6  
03_02_0487 + 8821543-8821866,8821958-8822335,8822928-8823020,882...    29   6.0  
11_04_0048 + 12792270-12792276,12793453-12793697,12793866-12794741     28   8.0  

>01_07_0105 - 41104655-41104851,41105818-41107150
          Length = 509

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
 Frame = -1

Query: 560 EQSQENKIEVSKE----TFYKVSETLKETIAQPKTFSL-RSLFTKDAEQDEAPQQETEYI 396
           E  +E  I VSK+    +  K +  LKE +   KT         KD + DE  QQ T   
Sbjct: 430 ETEEEKSIAVSKDDDGQSDGKQTIELKEAMTATKTDEKGEEQVAKDKKDDEQEQQATA-A 488

Query: 395 PLDVPKKKKGNPLDPGE 345
           P++ PK+++    DP E
Sbjct: 489 PIESPKQEQQATADPIE 505


>03_02_0487 +
           8821543-8821866,8821958-8822335,8822928-8823020,
           8823613-8824236
          Length = 472

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = -1

Query: 791 QLXILQNVLGVTLKSIEPEQDSQKPKPKL-GMLRFDPLQPSHAKFLMQQ 648
           +L ++  V+G  L  +  +   Q P   L   L+ DP++ S AK+++QQ
Sbjct: 71  ELQLMLGVIGAPLIPLPVDHAKQSPCSVLCEQLKADPIESSTAKYIIQQ 119


>11_04_0048 + 12792270-12792276,12793453-12793697,12793866-12794741
          Length = 375

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
 Frame = -1

Query: 566 HLEQSQENKIEVSKETFYKVSET---LKETIA-QPKTFSLRSLFTKDAEQDEAPQQETEY 399
           +L +  + K+E  +E  +K+S     L+ T + +  + S+  +  KD    E   +E EY
Sbjct: 8   NLAEVLQKKVEQKEEESHKISHDNAFLESTPSCEVGSTSIEEVEEKDCVASELSMEEKEY 67

Query: 398 IPLDVPKKKKGNP 360
           +  DV  +K  +P
Sbjct: 68  VAADVLARKFDSP 80


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,793,033
Number of Sequences: 37544
Number of extensions: 230998
Number of successful extensions: 623
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)