Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11k11
         (833 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC113712-1|AAI13713.1|  398|Homo sapiens FLJ46536 protein protein.     31   5.1  
AK131246-1|BAD18426.1|  607|Homo sapiens protein ( Homo sapiens ...    31   5.1  
AK128393-1|BAC87417.1|  398|Homo sapiens mily M, alpha member 1 ...    31   5.1  
BC028363-1|AAH28363.1|  931|Homo sapiens phosphatidylinositol gl...    31   6.8  
AL137607-1|CAB70839.1|  825|Homo sapiens hypothetical protein pr...    31   6.8  
AF109219-1|AAD11432.1|  931|Homo sapiens Mcd4p homolog protein.        31   6.8  
AB065806-1|BAC06025.1|  311|Homo sapiens seven transmembrane hel...    30   9.0  

>BC113712-1|AAI13713.1|  398|Homo sapiens FLJ46536 protein protein.
          Length = 398

 Score = 31.1 bits (67), Expect = 5.1
 Identities = 11/42 (26%), Positives = 29/42 (69%)
 Frame = -1

Query: 155 QKDRRELKSLMKRRIYNKERKNQMFHKKIGGRRKTMKKSYRK 30
           Q++R EL++ ++++    ER++ M+ +++GG+R  ++   R+
Sbjct: 281 QEERAELQAQLEQKQQEAERRDAMYQEELGGQRDLVQAMKRR 322


>AK131246-1|BAD18426.1|  607|Homo sapiens protein ( Homo sapiens
           cDNA FLJ16168 fis, clone BRHIP2002722. ).
          Length = 607

 Score = 31.1 bits (67), Expect = 5.1
 Identities = 11/42 (26%), Positives = 29/42 (69%)
 Frame = -1

Query: 155 QKDRRELKSLMKRRIYNKERKNQMFHKKIGGRRKTMKKSYRK 30
           Q++R EL++ ++++    ER++ M+ +++GG+R  ++   R+
Sbjct: 474 QEERAELQAQLEQKQQEAERRDAMYQEELGGQRDLVQAMKRR 515


>AK128393-1|BAC87417.1|  398|Homo sapiens mily M, alpha member 1
           (Kcnma1).  protein.
          Length = 398

 Score = 31.1 bits (67), Expect = 5.1
 Identities = 11/42 (26%), Positives = 29/42 (69%)
 Frame = -1

Query: 155 QKDRRELKSLMKRRIYNKERKNQMFHKKIGGRRKTMKKSYRK 30
           Q++R EL++ ++++    ER++ M+ +++GG+R  ++   R+
Sbjct: 281 QEERAELQAQLEQKQQEAERRDAMYQEELGGQRDLVQAMKRR 322


>BC028363-1|AAH28363.1|  931|Homo sapiens phosphatidylinositol
           glycan anchor biosynthesis, class N protein.
          Length = 931

 Score = 30.7 bits (66), Expect = 6.8
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +2

Query: 524 PWTLLSCSLVIVLNVLVYFDSHSACPFSFFFYSL--VQFLHLRLAALKILHDLV 679
           P  LL CS V +  ++ +F    ACP++++ Y L  +   +  L   +++ DLV
Sbjct: 480 PSHLLPCSFVAIGILVAFFLLIQACPWTYYVYGLLPLPIWYAVLREFQVIQDLV 533


>AL137607-1|CAB70839.1|  825|Homo sapiens hypothetical protein
           protein.
          Length = 825

 Score = 30.7 bits (66), Expect = 6.8
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +2

Query: 524 PWTLLSCSLVIVLNVLVYFDSHSACPFSFFFYSL--VQFLHLRLAALKILHDLV 679
           P  LL CS V +  ++ +F    ACP++++ Y L  +   +  L   +++ DLV
Sbjct: 374 PSHLLPCSFVAIGILVAFFLLIQACPWTYYVYGLLPLPIWYAVLREFQVIQDLV 427


>AF109219-1|AAD11432.1|  931|Homo sapiens Mcd4p homolog protein.
          Length = 931

 Score = 30.7 bits (66), Expect = 6.8
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +2

Query: 524 PWTLLSCSLVIVLNVLVYFDSHSACPFSFFFYSL--VQFLHLRLAALKILHDLV 679
           P  LL CS V +  ++ +F    ACP++++ Y L  +   +  L   +++ DLV
Sbjct: 480 PSHLLPCSFVAIGILVAFFLLIQACPWTYYVYGLLPLPIWYAVLREFQVIQDLV 533


>AB065806-1|BAC06025.1|  311|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 311

 Score = 30.3 bits (65), Expect = 9.0
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +2

Query: 560 LNVLVYFDSHSACPFSFFF--YSLVQFLHLRLAALKILHDLVEEDQISTFL 706
           L VL+  DSH   P  FF    S +   ++     K+L +L++E Q  TF+
Sbjct: 46  LIVLIRMDSHLHTPMYFFLSNLSFIDVCYISSTVPKMLSNLLQEQQTITFV 96


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,834,849
Number of Sequences: 237096
Number of extensions: 1359452
Number of successful extensions: 4091
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4083
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10482413384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)