Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11k10
(803 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 31 0.25
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ... 30 0.44
SPAC664.08c |||traub transciption factor family protein |Schizos... 29 0.77
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 1.0
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ... 28 1.4
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 28 1.8
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 27 2.4
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 27 2.4
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 27 2.4
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 27 2.4
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 27 2.4
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr... 27 3.1
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 26 5.5
SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosac... 26 5.5
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ... 26 5.5
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 26 5.5
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom... 26 7.2
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch... 26 7.2
SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces ... 26 7.2
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c... 26 7.2
SPBC13E7.08c |||RNA polymerase II associated Paf1 complex |Schiz... 26 7.2
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 25 9.5
SPAC16A10.02 |||transcription coactivator Sub1 |Schizosaccharomy... 25 9.5
>SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 30.7 bits (66), Expect = 0.25
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = +3
Query: 66 MAQTSPSSFSS*CPALEAHR-RTPRQKNPCSSKLSPQSNHHFHSSP-YPMFLCISSSSPS 239
+ Q+SP + P E+ R + + K+P S+ L+ S HH + P P FL S SSP+
Sbjct: 119 IGQSSPRALRYLSP--ESQRIKNAKMKSPISTHLAKYSIHHMGTPPSKPSFLSSSVSSPA 176
>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 803
Score = 29.9 bits (64), Expect = 0.44
Identities = 23/82 (28%), Positives = 35/82 (42%)
Frame = -3
Query: 300 TDHPKFGSPETCKQRREPSLGRENLKKYRETSDTEKNESDDYSEEIASKNMDSSVVESDG 121
TD P + + E S+ N K+ + D E +SD Y EE S S+V DG
Sbjct: 131 TDSPSATTSSPISRNPEYSVSPPNGSKFVKNED-EAYDSDLYVEEEDSDVKGRSMVGRDG 189
Query: 120 VLQELGIKRRTRRGKFAPFAQV 55
+ +KRR + P + +
Sbjct: 190 RYKSEDLKRRKLQPSSKPLSSL 211
>SPAC664.08c |||traub transciption factor family protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 452
Score = 29.1 bits (62), Expect = 0.77
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -3
Query: 234 ENLKKYRETSDTEKNESDDYSEEIASKNMD 145
EN +S +E+NE DD S I K+MD
Sbjct: 111 ENFSSSEASSISEENEDDDQSSAIPEKDMD 140
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 28.7 bits (61), Expect = 1.0
Identities = 27/95 (28%), Positives = 42/95 (44%)
Frame = +3
Query: 144 NPCSSKLSPQSNHHFHSSPYPMFLCISSSSPSLDLARVSVCKSPGIRTSGGPSADTSGSR 323
+P S+ + S+ SSP ISSSS S ++ S +S S+ TS S
Sbjct: 282 SPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSS 341
Query: 324 RRTGPAYRRF*LSL*APRQSFRSTSSFLANLSQSS 428
+ + S + S +S+SSF + +S SS
Sbjct: 342 TISSSSSSPSSSSFSSTTSSSKSSSSFSSTVSSSS 376
>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 28.3 bits (60), Expect = 1.4
Identities = 25/100 (25%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Frame = -3
Query: 387 ESSDEELKVRVKTDGRPDRFFYETLMCQQ-TDHPKFGSPETCKQRREPSLGRENLKKYRE 211
+ S +E K + T+ RP+ + TL + ++ K SPE REPSL ++ +E
Sbjct: 481 KGSPKEPKAKPSTE-RPET--HRTLSYSRLSELSKTFSPEI----REPSLTKKTAVSMQE 533
Query: 210 TSDTEKNESDDYSEEIASKNMDSSVVESDGVLQELGIKRR 91
+ + +++ SEE S + +S E + + +++R
Sbjct: 534 SKEEGRSDESSESEESGSSSDESDNSEKEDRSNPIPVEKR 573
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 27.9 bits (59), Expect = 1.8
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = -2
Query: 733 RHQLQHVCSWHDISDSLRNQGHGRHHDILPGEVSFELPPEDT 608
+ + + S +IS +L GHGRH +LP E + +L E+T
Sbjct: 353 KEEFGDMVSDEEISKALAKYGHGRHGIVLP-ESAKQLELEET 393
>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
complex associated protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 710
Score = 27.5 bits (58), Expect = 2.4
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Frame = -3
Query: 255 REPSLGRENLKKYRET--SDTEKNESDDYSEEIASKNMDSSVVESDGVL--QELGIKRRT 88
++ + EN+ RE S +++ S SEEIAS +++V SD ++ G K+R
Sbjct: 445 KDSGISSENVSNNREELPSFRKRSSSSRQSEEIASLQAENAVFSSDPASNDEKTGNKKRK 504
Query: 87 RR 82
++
Sbjct: 505 KK 506
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 27.5 bits (58), Expect = 2.4
Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 9/74 (12%)
Frame = -3
Query: 321 ETLMCQQTDHPKFGSPETCKQRREPS---------LGRENLKKYRETSDTEKNESDDYSE 169
E L + + H G + R+ PS L EN + +D +NE YSE
Sbjct: 57 EKLSSEASSHSTLGQQQARDGRQSPSKEAPFGEGELKLENFENQENEADEAENEETSYSE 116
Query: 168 EIASKNMDSSVVES 127
+ ++N + ES
Sbjct: 117 QNHTENTEEIAEES 130
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 27.5 bits (58), Expect = 2.4
Identities = 19/57 (33%), Positives = 33/57 (57%)
Frame = -3
Query: 246 SLGRENLKKYRETSDTEKNESDDYSEEIASKNMDSSVVESDGVLQELGIKRRTRRGK 76
SLG + ++ R T + E +E ++ +ASKN D ++ E++ LQE+ + T R K
Sbjct: 460 SLGNQ-IESLR-TQNREIDEEKNHLRLLASKNSDKALAETNIRLQEVTKELETLRMK 514
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 27.5 bits (58), Expect = 2.4
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -3
Query: 273 ETCKQRREPSLGRENLKK-YRETSDTEKNESDDYSEEIASKNMDS 142
E C R PS+ +++L K + SD ++NE D+YS + D+
Sbjct: 795 ELC-HRFFPSMSKKDLTKLFGGVSDQQRNECDNYSNHYNDNSNDN 838
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1919
Score = 27.5 bits (58), Expect = 2.4
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -3
Query: 273 ETCKQRREPSLGRENLKK-YRETSDTEKNESDDYSEEIASKNMDS 142
E C R PS+ +++L K + SD ++NE D+YS + D+
Sbjct: 795 ELC-HRFFPSMSKKDLTKLFGGVSDQQRNECDNYSNHYNDNSNDN 838
>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 749
Score = 27.1 bits (57), Expect = 3.1
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +3
Query: 105 PALEAHRRTPRQKNPCSSKLSPQSNHHFHSSPYPMFLCISS-SSPS 239
P + H ++ SS+L+ SN+H HSS + SS +SPS
Sbjct: 34 PLKKIHSADSSRRRSTSSQLNQPSNYHMHSSLHEEVSVGSSIASPS 79
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 26.2 bits (55), Expect = 5.5
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 3/117 (2%)
Frame = -3
Query: 522 SGDEAGAPGAFAPQSPRPPLVVGDVKRCPRA-KKTATGSPKNCSSNESSDEELKVRVKTD 346
S ++ A + PQ P P L + P++ K+ + K ++ SS E +K R KT
Sbjct: 898 SSSKSDAAKSIKPQKPEPALKPVEGTADPKSTKRNHQETEKTADTDVSSTEPVK-RQKTA 956
Query: 345 GRPDRFFYETLMCQQTDHPKFGSPETCKQRREPSLGRENLKKYRETSD--TEKNESD 181
D E + +Q+ + S + + + SL + +K +TS+ T +N +D
Sbjct: 957 DVNDDVGEEEV--KQSVSEQVDSAQLTSEPKSESLPKSPEEKSDDTSNDVTTENTND 1011
>SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 136
Score = 26.2 bits (55), Expect = 5.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 120 VLQELGIKRRTRRGKFAPFAQVVN 49
V + +G KR RR + PF +VVN
Sbjct: 53 VTKSMGAKRIARRSRVKPFIKVVN 76
>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 463
Score = 26.2 bits (55), Expect = 5.5
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = -3
Query: 237 RENLKKYRETSDTEKNESDDYSEEIASK-NMDSSVVESD 124
R+NL K++ S +K +S+D S +S +M VV+S+
Sbjct: 95 RDNLSKFQRNSRIKKLQSEDASSIASSTLSMGEPVVDSE 133
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 26.2 bits (55), Expect = 5.5
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = -1
Query: 509 PEHR--APSPPSPLDRHWWSVT*KDVQGPRRLRQVRQKTARR 390
P HR +PSPP D H + ++++ ++L R + R
Sbjct: 125 PHHRERSPSPPPQYDNHGRRLNTREIRYKKKLEDERHRIIER 166
>SPAC31G5.15 |||phosphatidylserine decarboxylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 980
Score = 25.8 bits (54), Expect = 7.2
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3
Query: 150 CSSKLSPQSNHHFHS 194
C S+L+PQ H FHS
Sbjct: 825 CISRLAPQDYHRFHS 839
>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 681
Score = 25.8 bits (54), Expect = 7.2
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = -2
Query: 748 RKRKLRHQLQHVCSWHDISDSL 683
R+ L+ L+++CS HD++D L
Sbjct: 44 RQNLLKIDLKNICSLHDLTDQL 65
>SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 878
Score = 25.8 bits (54), Expect = 7.2
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -3
Query: 444 RCPRAKKTATGSPKNCSSNESSDEELKVRVKT 349
RCPR+ TAT + S E +E K V T
Sbjct: 204 RCPRSTFTATSPEQTSSEQEPCGDEAKQFVVT 235
>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
3|||Manual
Length = 594
Score = 25.8 bits (54), Expect = 7.2
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = +3
Query: 105 PALEAHRRTPRQKNPCSSKLSPQSNHHFHSSPYPMFLCISSSSPS 239
P L++ TP SS P S + HS+P P IS PS
Sbjct: 369 PQLQSGFTTPNLSRRNSSDFGPNSPVNIHSNPVP----ISGQQPS 409
>SPBC13E7.08c |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = +1
Query: 31 RRLPHQIDDLSEWRKLPPPRSPLDAQLLKHTVGLHDRRI 147
+R+ H++D+ WR P +AQ+++ + G + RI
Sbjct: 128 QRIKHKVDNTVRWRLGPSGSYQSNAQIVQWSDGSYSLRI 166
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -3
Query: 234 ENLKKYRETSDTEKNESDDYSEEIA 160
+NLK+ R SD E NE+ + ++A
Sbjct: 635 DNLKRKRSESDVEDNEAKEKQAKVA 659
>SPAC16A10.02 |||transcription coactivator Sub1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 136
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -3
Query: 234 ENLKKYRETSDTEKNESDDYSEEIASKNMDSSV 136
+ +K+ E + + KN+ DD + + +K DSSV
Sbjct: 102 DEIKEKAENNASLKNDEDDLNTKTENKTDDSSV 134
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,391,923
Number of Sequences: 5004
Number of extensions: 73597
Number of successful extensions: 310
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 310
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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