Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11k10
(803 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0352 + 20533846-20534038,20534117-20534391,20535134-20535634 33 0.27
03_05_0382 + 23649597-23649645,23649675-23649735,23650784-236509... 33 0.27
02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-57... 33 0.35
08_02_0307 - 15612761-15612856,15613879-15613950,15614325-15615290 32 0.46
11_06_0561 - 24984960-24985205,24985283-24985354,24985906-249859... 31 0.81
08_02_1424 + 26982502-26983572,26984129-26984908,26988299-26990128 31 1.4
07_01_0389 - 2915191-2915604,2915696-2915752,2915867-2915922,291... 31 1.4
03_01_0216 - 1700223-1700666,1700749-1700860,1701534-1701837,170... 31 1.4
10_08_0789 + 20569738-20570207,20573425-20573464,20573484-205735... 30 1.9
05_04_0160 - 18624952-18625106,18625411-18625535,18625954-186260... 30 1.9
01_05_0174 + 18919759-18920265,18920381-18920443,18921060-189217... 30 1.9
11_01_0658 + 5342508-5343602,5343697-5343764,5343994-5344042,534... 30 2.5
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322... 30 2.5
05_05_0299 - 23930657-23932627 30 2.5
09_04_0549 + 18478475-18478664,18479381-18480648 29 3.3
09_04_0547 + 18467016-18467205,18467922-18469189 29 3.3
08_02_0204 - 14253258-14253383,14253685-14253878,14254029-142547... 29 3.3
04_04_1351 - 32827136-32827984 29 3.3
04_01_0244 - 3194141-3195091,3195301-3195312 29 3.3
08_01_0399 + 3524723-3525272,3525468-3525544,3526816-3526861,352... 29 4.3
03_06_0604 - 35006004-35008580 29 4.3
02_03_0243 - 16791789-16793306 29 4.3
11_04_0332 + 16465360-16465769,16465873-16466272,16466379-164664... 29 5.7
10_06_0061 + 10196105-10196156,10198110-10198406,10198753-101998... 29 5.7
09_05_0016 + 20089545-20089748,20090072-20090263,20090644-200908... 29 5.7
08_02_0610 + 19307537-19308011,19308187-19310846 29 5.7
07_01_0084 + 657846-658538,660652-661920 29 5.7
04_04_0596 - 26497863-26497913,26498010-26498081,26499015-264990... 29 5.7
03_03_0248 + 15819264-15819460,15820691-15820729,15820797-158209... 29 5.7
02_05_1273 + 35381626-35382486,35382567-35382691,35384851-353854... 29 5.7
01_01_0127 + 1164871-1165346,1165835-1165934,1166007-1166102,116... 29 5.7
12_01_0030 + 262452-263210,263332-263575,263867-264165 28 7.6
05_03_0354 - 12871313-12871429,12872829-12873143 28 7.6
04_03_0926 - 20861383-20862198,20862359-20862430,20862938-208631... 28 7.6
03_06_0724 - 35757228-35757323,35757837-35757893,35757983-357580... 28 7.6
03_03_0020 + 13803567-13804610 28 7.6
01_07_0037 + 40657449-40658010,40658567-40658901 28 7.6
04_04_1115 + 31008213-31008707,31009385-31009689,31010848-310111... 28 10.0
03_02_0594 - 9695616-9696042,9696646-9697260,9697410-9697717,970... 28 10.0
02_01_0102 - 749122-749799,750123-750371,750753-750851,751380-75... 28 10.0
>05_04_0352 + 20533846-20534038,20534117-20534391,20535134-20535634
Length = 322
Score = 33.1 bits (72), Expect = 0.27
Identities = 23/72 (31%), Positives = 31/72 (43%)
Frame = +1
Query: 427 LGPWTSFHVTDHQWRSRGLGGEGARCSGLITAHRFVREIKITMRDPLHVRPGHNVFGHVE 606
L P FH TD + L RC+GL A + E+ + DP H+ P ++G E
Sbjct: 18 LPPGFRFHPTDEELVMHYLC---RRCAGLPIAVPIIAEVDLYKFDPWHL-PRMALYGEKE 73
Query: 607 WYLREEVRMKLP 642
WY K P
Sbjct: 74 WYFFSPRDRKYP 85
>03_05_0382 +
23649597-23649645,23649675-23649735,23650784-23650937,
23651019-23651149,23651239-23651315,23651439-23651477,
23651976-23652067,23652140-23652277,23652385-23652549
Length = 301
Score = 33.1 bits (72), Expect = 0.27
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = -3
Query: 750 IGSGNYDTNYNMFVPGTIFRIVFEIKDT 667
IGS NYDT+Y + VP RI+F++ T
Sbjct: 237 IGSSNYDTSYKIRVPSWTDRILFKVDHT 264
>02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-579174,
579266-579370,579975-580028,580244-580344,580454-581423,
582030-582203,582341-582643,582719-582856,582993-583247,
584230-584370,585008-585289,585395-585540,585627-585690,
585723-585799,586285-586301,587728-587867,587972-588029,
588121-588218,588727-588776,589260-589743
Length = 2630
Score = 32.7 bits (71), Expect = 0.35
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = -3
Query: 306 QQTDHPKFGSPETCKQRREPSLGRENLKKYRETSDTEKNESDDYSEEIASKNMDSSVVE 130
Q T HP SPET + +G E ++++ D SEE+ + M SS ++
Sbjct: 2053 QNTSHPAQQSPETSRHSIASPVGLEATQEFQPEMQ-PSTSGQDQSEELEQEGMSSSAIQ 2110
>08_02_0307 - 15612761-15612856,15613879-15613950,15614325-15615290
Length = 377
Score = 32.3 bits (70), Expect = 0.46
Identities = 30/111 (27%), Positives = 45/111 (40%), Gaps = 4/111 (3%)
Frame = +1
Query: 406 WRTCRSLLGPWTSFHVTDHQWRSRGLGGEGARCSGLITAHRFVREIKITMRDPLHVRPGH 585
WR + + F H WRS + C + RF + + + + PGH
Sbjct: 37 WRVLAGDVRDYICFRAACHHWRSC----TASPCGRGVVVPRFHPRRWMMLPEGNGLYPGH 92
Query: 586 NVF-GHVEWYLREE---VRMKLPLAVYRDDVRVLDFEDYPKYRARNKHVVV 726
G V ++ VR++LP+A RDD R+LD D RN+ V
Sbjct: 93 GKLRGFVRFFNLSTGAFVRLRLPIA--RDDHRILDSVDGILLLQRNRDTAV 141
>11_06_0561 -
24984960-24985205,24985283-24985354,24985906-24985977,
24986612-24986782,24987464-24987653,24987733-24987976,
24988162-24988474,24988687-24989517,24989628-24989672,
24989677-24989790,24989877-24990371,24990627-24990824,
24990902-24991357
Length = 1148
Score = 31.5 bits (68), Expect = 0.81
Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = -3
Query: 525 VSGDEAGAPG--AFAPQSPRPPLVVGDVKRCPRAKKTATGSPKNCS 394
VSG APG A AP+ PP V+ PRA TA P+ S
Sbjct: 79 VSGGGGSAPGGAATAPRQGAPPAAATSVQGAPRAPATAATVPQGGS 124
>08_02_1424 + 26982502-26983572,26984129-26984908,26988299-26990128
Length = 1226
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/38 (50%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = -3
Query: 207 SDTEKNESDDYSE-EIASKNMDSSVVESDGVLQELGIK 97
SD+ K +S+ S E AS DS V SDGV+QE G K
Sbjct: 365 SDSTKMKSETRSSMEGASTTSDSKTVPSDGVIQEDGPK 402
>07_01_0389 -
2915191-2915604,2915696-2915752,2915867-2915922,
2916053-2916113,2916243-2916365,2916505-2916537,
2916617-2916709,2916839-2916934,2917025-2917203,
2917344-2917530,2918051-2918184,2918311-2918518,
2918598-2918633,2918785-2919241,2919633-2919736,
2920489-2920569,2920646-2920697,2920837-2920876,
2920991-2921085,2921241-2921383,2921899-2922006,
2922120-2922221,2922302-2922348,2922425-2922554,
2923173-2923304,2923404-2923616,2923709-2923963,
2924053-2924799
Length = 1460
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = -3
Query: 486 PQSPRPPLVVGDVKRCPRAKKTATGSPKNCSSNESSDE 373
PQ P PP R PRA +TAT P + SS+ + D+
Sbjct: 10 PQPPPPPSPPNPPPRAPRATRTAT--PDDASSSSAVDD 45
>03_01_0216 -
1700223-1700666,1700749-1700860,1701534-1701837,
1702358-1702426,1702543-1702657,1702740-1702811,
1702918-1703016,1703148-1703219,1703394-1703465,
1704940-1705154,1705277-1705495,1705792-1707076,
1707270-1707398
Length = 1068
Score = 30.7 bits (66), Expect = 1.4
Identities = 35/123 (28%), Positives = 51/123 (41%), Gaps = 3/123 (2%)
Frame = -3
Query: 513 EAGAPGAFAPQSPRPPLVVGDVKRCPRAKKTATGSPKNCSSNESSDEELKVRVKT-DGRP 337
+A GA P PRP + D P+A K GS N + E + ++++V + D R
Sbjct: 570 QAQMDGANRPGQPRPHMPGMDNHAAPQANKD-DGSGANSAVQEDAPKKVEVEKQVLDSRE 628
Query: 336 DRFFYETLMCQQTDHPKFGSPETCKQRREPSLGRENLKKYRETSDTEKNESDDYSE--EI 163
+Y T M D + S C R R + K RE K + Y + E+
Sbjct: 629 KLEYYRTKM---QDLVLYKS--RCDNRLNEITERASSDK-REVESLAKKYEEKYKQVAEL 682
Query: 162 ASK 154
ASK
Sbjct: 683 ASK 685
>10_08_0789 + 20569738-20570207,20573425-20573464,20573484-20573536,
20573633-20574212,20574323-20575384,20575631-20575813,
20576112-20576199,20576285-20576532,20576712-20577053,
20579026-20579163,20579521-20579547
Length = 1076
Score = 30.3 bits (65), Expect = 1.9
Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 7/98 (7%)
Frame = -3
Query: 351 TDGRPDRFFYETLMCQQTDHPKFGSPETCKQRREP------SLGRENLK-KYRETSDTEK 193
T G P + + E + + K+ P+ C Q+ P SL K KY+ S+
Sbjct: 792 TIGSPKQLYSEFTWLHRPHNQKYILPQLCDQKGHPHCTVHASLAALEFKYKYKAASE--- 848
Query: 192 NESDDYSEEIASKNMDSSVVESDGVLQELGIKRRTRRG 79
N D+S + +K+M + G ELG +R + RG
Sbjct: 849 NPPHDFSSKFCTKHMLNVYAAKYG---ELGSERESTRG 883
>05_04_0160 -
18624952-18625106,18625411-18625535,18625954-18626087,
18626221-18626298,18626456-18626561,18627739-18627836
Length = 231
Score = 30.3 bits (65), Expect = 1.9
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 79 PPPRSPLDAQLLKHTVGLHDRRIHVLRSYLLR 174
PPP PLDA HT + +H+L L+R
Sbjct: 15 PPPPPPLDASAFTHTPYYCEENVHLLCKELIR 46
>01_05_0174 +
18919759-18920265,18920381-18920443,18921060-18921761,
18922934-18923068,18923391-18923474,18924095-18924151,
18924290-18924376,18924963-18925205
Length = 625
Score = 30.3 bits (65), Expect = 1.9
Identities = 31/151 (20%), Positives = 62/151 (41%), Gaps = 2/151 (1%)
Frame = -3
Query: 528 TVSGDEAGAPGAFAPQ--SPRPPLVVGDVKRCPRAKKTATGSPKNCSSNESSDEELKVRV 355
T D+ AP A AP P PP + P+ ++ ++ + + E D EL+
Sbjct: 13 TSDDDDDDAPAADAPPKAKPPPPPSSSSGPKKPKQRRLSSAAADDDDDVEEDDLELE--- 69
Query: 354 KTDGRPDRFFYETLMCQQTDHPKFGSPETCKQRREPSLGRENLKKYRETSDTEKNESDDY 175
+ D E + + + + ET +RR GR+ + E+ + E+ E ++
Sbjct: 70 --EEEEDEKDLEEMRRNEEEERR---EETQTRRRRRRRGRKPKRPAEESEEDEEEEEEEA 124
Query: 174 SEEIASKNMDSSVVESDGVLQELGIKRRTRR 82
E A + ++ V ++ G ++ R+
Sbjct: 125 KAEEAREEENTEAVPIGEPVKITGRGKKQRK 155
>11_01_0658 +
5342508-5343602,5343697-5343764,5343994-5344042,
5344217-5344333,5344438-5344506,5344631-5344725,
5345580-5345658,5346499-5346563,5347368-5347461,
5347675-5347744,5348363-5349357
Length = 931
Score = 29.9 bits (64), Expect = 2.5
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -2
Query: 796 PPGQHHIAVQEERHLDRKRKLRHQLQH 716
PP QH Q+++HLD + L+HQ QH
Sbjct: 145 PPPQHQ---QQQQHLDAMQDLQHQHQH 168
>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
3220080-3223195,3223303-3223561,3223665-3223951,
3224029-3224364,3224463-3224604,3224690-3224910,
3224990-3225151,3225242-3225400,3225488-3225787,
3226306-3226569,3227370-3227453
Length = 1855
Score = 29.9 bits (64), Expect = 2.5
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +3
Query: 144 NPCSSKLSPQSNHHFHSSPY-PMFLCISSSSPSLDLARVSVCKSPGIRTSGGPSADTSGS 320
+P S +LSP S + SP P + S +SPS S + TSGGPS D S +
Sbjct: 1760 SPSSPRLSPYSQTSPNYSPTSPTY---SPTSPSYSQPSPSYSPTSPYTTSGGPSPDYSPT 1816
Query: 321 RRRTGPA 341
P+
Sbjct: 1817 SPNYSPS 1823
>05_05_0299 - 23930657-23932627
Length = 656
Score = 29.9 bits (64), Expect = 2.5
Identities = 22/78 (28%), Positives = 32/78 (41%)
Frame = -3
Query: 261 QRREPSLGRENLKKYRETSDTEKNESDDYSEEIASKNMDSSVVESDGVLQELGIKRRTRR 82
+RRE E KK E+ E DD +E S + D+++ Q + RR RR
Sbjct: 48 KRREALQRLEERKKKGLVPPEEEEEEDDDDDESLSDDDDAAIASRRVDRQMFEVIRRIRR 107
Query: 81 GKFAPFAQVVNLMGKSSK 28
G A + SS+
Sbjct: 108 GDAAILDAKAKMYSSSSE 125
>09_04_0549 + 18478475-18478664,18479381-18480648
Length = 485
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/46 (26%), Positives = 26/46 (56%)
Frame = -3
Query: 780 ISLSRKNGIWIGSGNYDTNYNMFVPGTIFRIVFEIKDTDVITIYCQ 643
+SL + GI +G+GNY + + P + ++F+ +D+ + C+
Sbjct: 134 VSLPAQRGISLGTGNYVVSVGLGTPAKQYAVIFD-TGSDLSWVQCK 178
>09_04_0547 + 18467016-18467205,18467922-18469189
Length = 485
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/46 (26%), Positives = 26/46 (56%)
Frame = -3
Query: 780 ISLSRKNGIWIGSGNYDTNYNMFVPGTIFRIVFEIKDTDVITIYCQ 643
+SL + GI +G+GNY + + P + ++F+ +D+ + C+
Sbjct: 134 VSLPAQRGISLGTGNYVVSVGLGTPAKQYAVIFD-TGSDLSWVQCK 178
>08_02_0204 - 14253258-14253383,14253685-14253878,14254029-14254743,
14254811-14254837,14258779-14258838,14263174-14264844,
14267402-14267518,14267593-14267763,14270248-14270346,
14271684-14271770,14272392-14272475,14272929-14273068,
14274414-14274494,14275492-14275680,14275986-14276022
Length = 1265
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = +3
Query: 105 PALEAHRRTPRQKNPCSSKLSPQSNHHFHSSPYPMFLCISSSSPSLDLARVSVCKSP 275
PA E + P +L ++ +HFH+ YPM + I + + S A + +SP
Sbjct: 1090 PATETLNSSRAHPQPMPMQLPTETVNHFHAPHYPMQMPIENMALSRTQAMPTQMQSP 1146
>04_04_1351 - 32827136-32827984
Length = 282
Score = 29.5 bits (63), Expect = 3.3
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = -3
Query: 525 VSGDEAGAPGAFAPQSPRPPLVVGDVKRCPRAKKTATGSPKNCSSNESSDEELKVRVKTD 346
+ G G G ++P SP PP G K CP + +P SS+ + LK+ V D
Sbjct: 159 IGGGSGG--GGYSP-SPSPPKRHGGRKACPPSPTPTPSTPTPSSSDTCPIDALKLGVCVD 215
>04_01_0244 - 3194141-3195091,3195301-3195312
Length = 320
Score = 29.5 bits (63), Expect = 3.3
Identities = 18/64 (28%), Positives = 29/64 (45%)
Frame = +3
Query: 132 PRQKNPCSSKLSPQSNHHFHSSPYPMFLCISSSSPSLDLARVSVCKSPGIRTSGGPSADT 311
PR P ++ +P ++P P + +S+ + +L A S + P G SA
Sbjct: 209 PRNPPPPAAPAAPPVPPAVPAAPAPAPVHMSAPASALSFALASAARGPASGNGGWLSATP 268
Query: 312 SGSR 323
SGSR
Sbjct: 269 SGSR 272
>08_01_0399 +
3524723-3525272,3525468-3525544,3526816-3526861,
3527121-3527235,3528252-3528306,3528432-3528557
Length = 322
Score = 29.1 bits (62), Expect = 4.3
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = +1
Query: 466 WRSRGLGGEGARCSGLITAHRFVREIKITMRDPLHVRPGHNV 591
WR G GG GAR G++ A R R ++ LH R H V
Sbjct: 137 WRRGGCGGGGAR--GVLPAKRAPRAPRMRWTSTLHARFVHAV 176
>03_06_0604 - 35006004-35008580
Length = 858
Score = 29.1 bits (62), Expect = 4.3
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Frame = +3
Query: 147 PCSSKLSPQSNHHFHSSP---YPMFLCISSSSPSLDLARVSVCKSPGIRTSG-GPSADTS 314
P S LSP +N SSP + + S +SPSL +A ++ + T+G G + D+
Sbjct: 31 PLGSSLSP-ANQALWSSPNNTFSLSFTASPTSPSLFVAAITYAGGVPVWTAGNGATVDSG 89
Query: 315 GSRR 326
G+ R
Sbjct: 90 GALR 93
>02_03_0243 - 16791789-16793306
Length = 505
Score = 29.1 bits (62), Expect = 4.3
Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +3
Query: 258 SVCKSPGIRTSGGPSADTSGSR-RRTGP 338
S+C+ G R SGG SA TS SR RR P
Sbjct: 442 SLCRRSGWRGSGGASAKTSPSRGRRRDP 469
>11_04_0332 +
16465360-16465769,16465873-16466272,16466379-16466423,
16467113-16467139,16467201-16467266,16467889-16467950,
16468049-16468123,16468218-16468383,16468611-16468734,
16469737-16469843,16469992-16470102
Length = 530
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/60 (26%), Positives = 27/60 (45%)
Frame = +1
Query: 430 GPWTSFHVTDHQWRSRGLGGEGARCSGLITAHRFVREIKITMRDPLHVRPGHNVFGHVEW 609
GP ++ V R G+G +G L+ +F +E+ +T DP V+ + G W
Sbjct: 13 GPQRNYQVVVAATRDMGIGKDGVLPWKLLGDLKFFKELTVTTADP--VKKNAVIMGRKTW 70
>10_06_0061 +
10196105-10196156,10198110-10198406,10198753-10199813,
10199900-10200250
Length = 586
Score = 28.7 bits (61), Expect = 5.7
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -3
Query: 390 NESSDEELKVRVKTDGRPDRFFYETLMCQQTDH 292
N SS +TDG+P R Y+T+ Q H
Sbjct: 80 NSSSSGNKFAEARTDGQPSRTVYQTVQIQPNTH 112
>09_05_0016 +
20089545-20089748,20090072-20090263,20090644-20090814,
20090915-20091096,20091189-20091435,20091776-20091908,
20092070-20092599,20092940-20093170
Length = 629
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -3
Query: 498 GAFAPQSPRPPLVVGDVKRCPRAKKTATGSPKNCSSNESSDEEL 367
G P+ PRP V +K R+KK +G S +SSD +L
Sbjct: 571 GFETPKGPRPSGVQLSIKEFYRSKKGLSGDSGKDGSRKSSDVDL 614
>08_02_0610 + 19307537-19308011,19308187-19310846
Length = 1044
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -3
Query: 144 SSVVESDGVLQELGIKRRTRRGKFAPFAQVVNLM 43
SS DGVLQ + +R R G F F ++VN++
Sbjct: 983 SSSPAMDGVLQSVPRRRTPRSGGFERFCKIVNVV 1016
>07_01_0084 + 657846-658538,660652-661920
Length = 653
Score = 28.7 bits (61), Expect = 5.7
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = -2
Query: 709 SWHDISDSLRNQGHGRHHDILPGEVSFELPPEDTTQHGQIHCGLGGRGEDLALLF 545
S+H I HGRH GEV+F+ P ++ Q+H +++ ++F
Sbjct: 110 SYHHIDHDGNPLPHGRHRVAASGEVAFDSP----SRPDQVHLSFADGVDEMRVMF 160
>04_04_0596 -
26497863-26497913,26498010-26498081,26499015-26499093,
26499440-26499553,26499822-26499871,26500353-26500398,
26501100-26501719
Length = 343
Score = 28.7 bits (61), Expect = 5.7
Identities = 20/66 (30%), Positives = 29/66 (43%)
Frame = -3
Query: 279 SPETCKQRREPSLGRENLKKYRETSDTEKNESDDYSEEIASKNMDSSVVESDGVLQELGI 100
S E K+RR+ R ++ R S +ES+ SE S S E+D +
Sbjct: 75 SGERRKRRRKEKERRHRRRRSRSASSGSSSESESESESSYSDCSAGSESETDSEEERRRR 134
Query: 99 KRRTRR 82
+RR RR
Sbjct: 135 RRRRRR 140
>03_03_0248 +
15819264-15819460,15820691-15820729,15820797-15820936,
15821150-15821225,15822866-15823160,15823236-15823342,
15823442-15823489,15823568-15823853,15823954-15823961,
15824083-15824184,15824426-15824553,15824664-15824741,
15825047-15825145,15825247-15825302
Length = 552
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -3
Query: 207 SDTEKNESDDYSEEIASKNMDSSVVESDGVLQELGIKR 94
SD E E +D +E + DSS + + +E G+KR
Sbjct: 184 SDEEDEEEEDEEDEKGFSSDDSSDERMESIAKEFGVKR 221
>02_05_1273 +
35381626-35382486,35382567-35382691,35384851-35385450,
35385550-35385841,35386199-35386364,35386664-35386707,
35386866-35386979,35387171-35387290,35387541-35387626,
35388340-35388502
Length = 856
Score = 28.7 bits (61), Expect = 5.7
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = -3
Query: 264 KQRREPSLGRENLKKYRETS--DTEKNESDDYSEEIASKNMDSSVVESDGVL 115
++ R PS+ L + R++ T ++ES SE+++ DSSV ES GVL
Sbjct: 304 EEERPPSVAARELGQLRQSHRVSTLRSESAVSSEDVS--RFDSSVAESVGVL 353
>01_01_0127 +
1164871-1165346,1165835-1165934,1166007-1166102,
1166182-1166265,1166809-1166871
Length = 272
Score = 28.7 bits (61), Expect = 5.7
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +3
Query: 192 SSPYPMFLCISSSSPSLDLA 251
++PYP+FL ISSS P+ LA
Sbjct: 81 AAPYPIFLAISSSPPAPGLA 100
>12_01_0030 + 262452-263210,263332-263575,263867-264165
Length = 433
Score = 28.3 bits (60), Expect = 7.6
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +1
Query: 1 QLKQIQLISLRRLPHQIDDLSEWRKLPPPRSPLDAQLLKH 120
QL QI ++ RR PH+ + W P PR L +L H
Sbjct: 12 QLGQIYVLPRRRQPHRGLHAAPWPPPPRPRRVLGPRLQHH 51
>05_03_0354 - 12871313-12871429,12872829-12873143
Length = 143
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +1
Query: 415 CRSLLGPWTSFHVTDHQWRSRGLGGEGARCSGLIT 519
CR G + DH+WR G GEG GL T
Sbjct: 3 CRESTGAFEGEKGGDHRWRGPG-DGEGEHAGGLTT 36
>04_03_0926 -
20861383-20862198,20862359-20862430,20862938-20863123,
20863214-20863304,20863698-20863852,20864501-20864579,
20866797-20867263
Length = 621
Score = 28.3 bits (60), Expect = 7.6
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = -3
Query: 510 AGAPGAFAPQSPRPPLVVGDVKRCPRAKKTATGSPKNCSSNESSDEELKVRVKTD 346
A +P A AP+ P P +V +V+ +A +G + E +EE R+ TD
Sbjct: 74 APSPAAAAPRPPAPEVVAREVEVEVKADPGPSGVSMEEAKAEEVEEEKGERLPTD 128
>03_06_0724 -
35757228-35757323,35757837-35757893,35757983-35758075,
35758271-35758336,35758444-35758653,35758750-35759022,
35759112-35759251,35759330-35759471
Length = 358
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -3
Query: 276 PETCKQRREPSLGRENLKKYRETSDTEKNESDDYSEEIASKNMD 145
P +R EPS E E+ ++ ++SDD SEE+ + D
Sbjct: 58 PPKRAKRAEPSSDEERYSSDDESYSSDSDDSDDASEELDTVQAD 101
>03_03_0020 + 13803567-13804610
Length = 347
Score = 28.3 bits (60), Expect = 7.6
Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 2/21 (9%)
Frame = +1
Query: 457 DHQWRSRGLGGEG--ARCSGL 513
DH+W GLGG+ RC GL
Sbjct: 280 DHRWNQHGLGGDNVKGRCRGL 300
>01_07_0037 + 40657449-40658010,40658567-40658901
Length = 298
Score = 28.3 bits (60), Expect = 7.6
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = -3
Query: 516 DEAGAPGAFAPQSPRPPLVVGDVKRCPRAKKTATGSPKNCSS 391
D A G A + P PPL+V + AK+ S KN +S
Sbjct: 164 DLADGDGVDADELPPPPLMVMPISATVSAKRGGAASDKNSTS 205
>04_04_1115 +
31008213-31008707,31009385-31009689,31010848-31011108,
31011193-31011401,31011490-31011783,31011861-31011901,
31011987-31012055,31012164-31012264,31012351-31012435,
31012539-31012637,31012731-31012799,31012909-31013040,
31013128-31013222,31013340-31013421
Length = 778
Score = 27.9 bits (59), Expect = 10.0
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +1
Query: 37 LPHQIDDLSEWRKLPPPRSPLDAQLLKHTVGLHDRRIHVLRSYLL 171
+PH+ L+ LPPP + A H + + D R+ +L Y L
Sbjct: 1 MPHRRRLLNPAPSLPPPPAAAPAGFHHHLLAVDDTRLPLLADYAL 45
>03_02_0594 - 9695616-9696042,9696646-9697260,9697410-9697717,
9700145-9700235,9700698-9700759,9701256-9702962,
9703789-9703870,9703972-9704057,9704855-9704968,
9705113-9705163,9705261-9705358,9707084-9707546
Length = 1367
Score = 27.9 bits (59), Expect = 10.0
Identities = 27/104 (25%), Positives = 41/104 (39%), Gaps = 5/104 (4%)
Frame = -3
Query: 405 KNCSSNESSDEELKVRVKTDGRPDRFFYETLMCQQTDHP-----KFGSPETCKQRREPSL 241
KNC S E + + R T G TL C + D P FGS ++ +R+
Sbjct: 1211 KNCGSGEEAGDHDSER--THG--------TLPCSRDDEPVHVPSDFGSSKSQDNQRDEDD 1260
Query: 240 GRENLKKYRETSDTEKNESDDYSEEIASKNMDSSVVESDGVLQE 109
R L + E DD +I ++ + E DG ++E
Sbjct: 1261 DRLALVLVDPQPNAETGNEDDMRIDIQARKAQAEPREGDGEMEE 1304
>02_01_0102 - 749122-749799,750123-750371,750753-750851,751380-751889,
752025-753905,754093-754296,754807-754899,755036-755122,
755241-755328,755533-755645,755943-757259,757398-758672,
759166-759273
Length = 2233
Score = 27.9 bits (59), Expect = 10.0
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -3
Query: 273 ETCKQRREPSLGRENLKKYRETSDTEKNESDDYSEE 166
E ++RR G YRE D + ESDD SEE
Sbjct: 1586 EKLEKRRGRPKGSGKYSIYREIDDDDFEESDDDSEE 1621
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,357,987
Number of Sequences: 37544
Number of extensions: 574085
Number of successful extensions: 2371
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 2233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2366
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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