Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11k10
         (803 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    28   0.088
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.5  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        23   4.4  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    22   5.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   7.7  
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    22   7.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   7.7  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 28.3 bits (60), Expect = 0.088
 Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
 Frame = +3

Query: 132 PRQKNPCSSKLSPQSNHHFHSSPYPMFLC----ISSSSPSLDLARVSVCKSPGIRTSGGP 299
           PR+KN C     P+      S   P F+      +SSSPSLDL +    ++   R  G  
Sbjct: 341 PRRKNNCPLHCKPELGQ---SQSSPKFVARREESNSSSPSLDLGKEGGLEAQWSRVLGRV 397

Query: 300 SADTSGSRRRTGPAYRR 350
            A    + +R     RR
Sbjct: 398 HATIERNEKRLAEQDRR 414


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = -2

Query: 748 RKRKLRHQLQHVCSWHDISDSLRNQGHGRHHDILPGEVSFELPPEDTTQHGQIH 587
           ++++L  QLQ   S + +   L  QGH     + PGE    +   DT+   + H
Sbjct: 182 QQQRLIQQLQITQSQYLLQQGLGLQGHNPSSGLQPGE-GLPMWKSDTSDGPESH 234


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 18/64 (28%), Positives = 27/64 (42%)
 Frame = +3

Query: 156 SKLSPQSNHHFHSSPYPMFLCISSSSPSLDLARVSVCKSPGIRTSGGPSADTSGSRRRTG 335
           S  +P +     +SP    L  S S+ ++  A V+  +     +  G S   SGS   T 
Sbjct: 20  SSANPGTIQACTTSPATASLESSLSAAAVAAAAVNYAQQHNSPSPTGSSPQHSGSSASTS 79

Query: 336 PAYR 347
           PA R
Sbjct: 80  PAAR 83


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
 Frame = -3

Query: 801 RFHRDNIISLSRKNGIWIGSGNYDTNYNMFVPGTIFRI--VFEIKDTDVITIYCQGKF 634
           R     IIS    N  +    NY+ NYN +     + I  + +I     + +YC G F
Sbjct: 75  RSREPKIISSLSNNYNYSNYNNYNNNYNNYNKKLYYNINYIEQIPVPVPVPVYC-GNF 131


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -3

Query: 372 ELKVRVKTDGRPDRFFYETLMCQQT 298
           E  VRV   G+   F +E + C Q+
Sbjct: 36  EPPVRVSNGGKEQDFRFEAIQCLQS 60


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = -3

Query: 288 KFGSPETCKQRREPSLGRENLKKYRETSDTEKNESDDYSEEI 163
           KFG  E C  ++   +    L   +  S T +   DD++E++
Sbjct: 51  KFGCFEACVFQKLHFMDGNTLNVEKLESGTRELTPDDFTEDV 92


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -3

Query: 387 ESSDEELKVRVKTDGRPDRFFYETLMC 307
           ES D+E  +     G  DR  YET  C
Sbjct: 694 ESDDKEGYLHSVVSGALDRLHYETDPC 720



 Score = 21.8 bits (44), Expect = 7.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 694  KYRARNKHVVVGVVISASDPNAVLPGQ 774
            K ++  +HV+ G  + AS    V PGQ
Sbjct: 1006 KQQSPQQHVLPGKTLLASQIKLVSPGQ 1032


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 238,249
Number of Sequences: 438
Number of extensions: 6039
Number of successful extensions: 35
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25489170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)