Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11k09
         (824 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.08 |spc24||spindle pole body protein Spc24|Schizosacchar...    28   1.4  
SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce...    28   1.8  
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|...    27   4.3  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   9.9  

>SPBC336.08 |spc24||spindle pole body protein
           Spc24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 198

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 23/101 (22%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
 Frame = -3

Query: 507 KQVLAQLNNLRETEVRELESTVRLSDRKLFKSWEALKDSTDPTVFEPLLEEIKNRQTALD 328
           + + AQ+ + RE E+   ++  ++  RKL  S +A++            EEI +R+    
Sbjct: 29  QDIRAQIQSFREKELEGSQTKFKVLSRKLEISTQAMESLKQTAESSQHAEEILSREKEKF 88

Query: 327 CLVRLIESRRSKLARIPIPL----HSLPPLEPRDN--DDSC 223
            + +L+    +++  +   L      L  LE R+N  +D C
Sbjct: 89  RIAKLLNITENEIMSLESQLQKMKEQLLQLEERENTSEDIC 129


>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 563

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = -1

Query: 560 GTSYRARGHKGKL--CAHRRSKFLL 492
           G SY+AR H GKL  CAH   +F +
Sbjct: 110 GFSYKAREHTGKLDFCAHCNCRFTI 134


>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
           Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 624

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 16/63 (25%), Positives = 34/63 (53%)
 Frame = -3

Query: 558 DVVSRTRTQRKAVRAQKKQVLAQLNNLRETEVRELESTVRLSDRKLFKSWEALKDSTDPT 379
           D+++  + + + + ++   VL++ N LRET   E  +    SD KL +  + LK S+  +
Sbjct: 496 DLIAELQDELRGIESRLTSVLSECNMLRETASEEKNAFDAESD-KLERELQQLKLSSHNS 554

Query: 378 VFE 370
           + +
Sbjct: 555 MLQ 557


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +3

Query: 246  VRAVVGSATVWESWRASNDET-QSNAQD-SRARSACS*FPQA 365
            V+  +GS   W  W   +DE  Q+N Q+   A +A S F QA
Sbjct: 2915 VQIDIGSGKAWSEWGLYHDELFQANPQEIHHACNAVSCFLQA 2956


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,014,839
Number of Sequences: 5004
Number of extensions: 54811
Number of successful extensions: 179
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)