Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11k09
(824 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC132951-1|AAI32952.1| 468|Homo sapiens keratin 26 protein. 33 0.95
AJ564205-1|CAD91905.1| 468|Homo sapiens type I inner root sheat... 33 0.95
AB019691-1|BAA78718.1| 3899|Homo sapiens Centrosome- and Golgi-l... 31 3.8
BC030139-1|AAH30139.1| 1143|Homo sapiens NOL6 protein protein. 31 6.7
AL356218-13|CAI13314.1| 699|Homo sapiens nucleolar protein fami... 31 6.7
AL356218-12|CAI13315.1| 1146|Homo sapiens nucleolar protein fami... 31 6.7
AL356218-11|CAI13313.1| 1023|Homo sapiens nucleolar protein fami... 31 6.7
AF361081-1|AAL74405.1| 699|Homo sapiens nucleolar RNA-associate... 31 6.7
AF361080-1|AAL74404.1| 1007|Homo sapiens nucleolar RNA-associate... 31 6.7
AF361079-1|AAL74403.1| 1146|Homo sapiens nucleolar RNA-associate... 31 6.7
>BC132951-1|AAI32952.1| 468|Homo sapiens keratin 26 protein.
Length = 468
Score = 33.5 bits (73), Expect = 0.95
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = -3
Query: 483 NLRETEVRELESTVRLSDR-KLFKSWEALKDSTDPTVFEPLLEEIKNRQTALDCLVRLIE 307
NL + E R+ +ST S + S KDST+ T+ + ++EE+ L V +E
Sbjct: 389 NLLDGEERKSKSTCYKSKGYRPVNSGNQAKDSTEETIVKTVVEELDQIGNLLSLRVHSVE 448
Query: 306 SRRSKLARIPI 274
+ SK++ I +
Sbjct: 449 EKSSKISNITV 459
>AJ564205-1|CAD91905.1| 468|Homo sapiens type I inner root sheath
specific keratin 25 irs2 protein.
Length = 468
Score = 33.5 bits (73), Expect = 0.95
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = -3
Query: 483 NLRETEVRELESTVRLSDR-KLFKSWEALKDSTDPTVFEPLLEEIKNRQTALDCLVRLIE 307
NL + E R+ +ST S + S KDST+ T+ + ++EE+ L V +E
Sbjct: 389 NLLDGEERKSKSTCYKSKGYRPVNSGNQAKDSTEETIVKTVVEELDQIGNLLSLRVHSVE 448
Query: 306 SRRSKLARIPI 274
+ SK++ I +
Sbjct: 449 EKSSKISNITV 459
>AB019691-1|BAA78718.1| 3899|Homo sapiens Centrosome- and
Golgi-localized PKN-associated protein (CG-NAP) protein.
Length = 3899
Score = 31.5 bits (68), Expect = 3.8
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Frame = -3
Query: 474 ETEVRELESTVRLSDRKLFKSWEALKDSTDPTVFEP--LLEEIKNRQTALD 328
ET +R+LESTV D +L + ++ +KD + FE L ++I N Q ++
Sbjct: 2490 ETRLRQLESTVSAKDLELTQCYKQIKDMQEQGQFETEMLQKKIVNLQKIVE 2540
>BC030139-1|AAH30139.1| 1143|Homo sapiens NOL6 protein protein.
Length = 1143
Score = 30.7 bits (66), Expect = 6.7
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Frame = -3
Query: 510 KKQVLAQLNNLRETEVRELESTVRLSDRKLFKSWEALKDSTDPTVFEPLLEEIKNRQTAL 331
K+ +LN LRETE+ S +RL +L K + D + L E+ R +
Sbjct: 62 KEPTNEELNRLRETEILFHSSLLRLQVEELLKEVRLSEKKKDR--IDAFLREVNQRVVRV 119
Query: 330 DCLVRLIESRRSKL-ARIPIPLHSLP 256
+ + ++ L A + +PLH +P
Sbjct: 120 PSVPETELTDQAWLPAGVRVPLHQVP 145
>AL356218-13|CAI13314.1| 699|Homo sapiens nucleolar protein family
6 (RNA-associated) protein.
Length = 699
Score = 30.7 bits (66), Expect = 6.7
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Frame = -3
Query: 510 KKQVLAQLNNLRETEVRELESTVRLSDRKLFKSWEALKDSTDPTVFEPLLEEIKNRQTAL 331
K+ +LN LRETE+ S +RL +L K + D + L E+ R +
Sbjct: 62 KEPTNEELNRLRETEILFHSSLLRLQVEELLKEVRLSEKKKDR--IDAFLREVNQRVVRV 119
Query: 330 DCLVRLIESRRSKL-ARIPIPLHSLP 256
+ + ++ L A + +PLH +P
Sbjct: 120 PSVPETELTDQAWLPAGVRVPLHQVP 145
>AL356218-12|CAI13315.1| 1146|Homo sapiens nucleolar protein family
6 (RNA-associated) protein.
Length = 1146
Score = 30.7 bits (66), Expect = 6.7
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Frame = -3
Query: 510 KKQVLAQLNNLRETEVRELESTVRLSDRKLFKSWEALKDSTDPTVFEPLLEEIKNRQTAL 331
K+ +LN LRETE+ S +RL +L K + D + L E+ R +
Sbjct: 62 KEPTNEELNRLRETEILFHSSLLRLQVEELLKEVRLSEKKKDR--IDAFLREVNQRVVRV 119
Query: 330 DCLVRLIESRRSKL-ARIPIPLHSLP 256
+ + ++ L A + +PLH +P
Sbjct: 120 PSVPETELTDQAWLPAGVRVPLHQVP 145
>AL356218-11|CAI13313.1| 1023|Homo sapiens nucleolar protein family
6 (RNA-associated) protein.
Length = 1023
Score = 30.7 bits (66), Expect = 6.7
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Frame = -3
Query: 510 KKQVLAQLNNLRETEVRELESTVRLSDRKLFKSWEALKDSTDPTVFEPLLEEIKNRQTAL 331
K+ +LN LRETE+ S +RL +L K + D + L E+ R +
Sbjct: 62 KEPTNEELNRLRETEILFHSSLLRLQVEELLKEVRLSEKKKDR--IDAFLREVNQRVVRV 119
Query: 330 DCLVRLIESRRSKL-ARIPIPLHSLP 256
+ + ++ L A + +PLH +P
Sbjct: 120 PSVPETELTDQAWLPAGVRVPLHQVP 145
>AF361081-1|AAL74405.1| 699|Homo sapiens nucleolar RNA-associated
protein gamma protein.
Length = 699
Score = 30.7 bits (66), Expect = 6.7
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Frame = -3
Query: 510 KKQVLAQLNNLRETEVRELESTVRLSDRKLFKSWEALKDSTDPTVFEPLLEEIKNRQTAL 331
K+ +LN LRETE+ S +RL +L K + D + L E+ R +
Sbjct: 62 KEPTNEELNRLRETEILFHSSLLRLQVEELLKEVRLSEKKKDR--IDAFLREVNQRVVRV 119
Query: 330 DCLVRLIESRRSKL-ARIPIPLHSLP 256
+ + ++ L A + +PLH +P
Sbjct: 120 PSVPETELTDQAWLPAGVRVPLHQVP 145
>AF361080-1|AAL74404.1| 1007|Homo sapiens nucleolar RNA-associated
protein beta protein.
Length = 1007
Score = 30.7 bits (66), Expect = 6.7
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Frame = -3
Query: 510 KKQVLAQLNNLRETEVRELESTVRLSDRKLFKSWEALKDSTDPTVFEPLLEEIKNRQTAL 331
K+ +LN LRETE+ S +RL +L K + D + L E+ R +
Sbjct: 62 KEPTNEELNRLRETEILFHSSLLRLQVEELLKEVRLSEKKKDR--IDAFLREVNQRVVRV 119
Query: 330 DCLVRLIESRRSKL-ARIPIPLHSLP 256
+ + ++ L A + +PLH +P
Sbjct: 120 PSVPETELTDQAWLPAGVRVPLHQVP 145
>AF361079-1|AAL74403.1| 1146|Homo sapiens nucleolar RNA-associated
protein alpha protein.
Length = 1146
Score = 30.7 bits (66), Expect = 6.7
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Frame = -3
Query: 510 KKQVLAQLNNLRETEVRELESTVRLSDRKLFKSWEALKDSTDPTVFEPLLEEIKNRQTAL 331
K+ +LN LRETE+ S +RL +L K + D + L E+ R +
Sbjct: 62 KEPTNEELNRLRETEILFHSSLLRLQVEELLKEVRLSEKKKDR--IDAFLREVNQRVVRV 119
Query: 330 DCLVRLIESRRSKL-ARIPIPLHSLP 256
+ + ++ L A + +PLH +P
Sbjct: 120 PSVPETELTDQAWLPAGVRVPLHQVP 145
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,995,250
Number of Sequences: 237096
Number of extensions: 2134407
Number of successful extensions: 6853
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6853
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10315140830
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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