Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11k09
         (824 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014298-966|AAF46211.1|  933|Drosophila melanogaster CG4557-PA ...    32   0.83 
AL031582-1|CAA20895.1| 1082|Drosophila melanogaster EG:118B3.2 p...    30   4.4  
AF181633-1|AAD55419.1|  949|Drosophila melanogaster EG:118B3.2 p...    30   4.4  
AE014298-63|AAF45522.2|  950|Drosophila melanogaster CG13366-PA,...    30   4.4  
AE014298-62|ABI30962.1| 1094|Drosophila melanogaster CG13366-PB,...    30   4.4  
BT021442-1|AAX33590.1|  334|Drosophila melanogaster GH05177p pro...    29   5.8  
AE014298-1385|AAF46535.2|  334|Drosophila melanogaster CG1791-PA...    29   5.8  
AY121711-1|AAM52038.1|  518|Drosophila melanogaster RH63657p pro...    29   7.7  
AE014297-2032|AAF55188.1|  518|Drosophila melanogaster CG14868-P...    29   7.7  

>AE014298-966|AAF46211.1|  933|Drosophila melanogaster CG4557-PA
           protein.
          Length = 933

 Score = 32.3 bits (70), Expect = 0.83
 Identities = 23/89 (25%), Positives = 47/89 (52%), Gaps = 12/89 (13%)
 Frame = -3

Query: 558 DVVSRTRTQRKAVRAQKKQVLAQLNNLRET------EVRELESTVRLSDRKLFKSWEALK 397
           D+  RTR ++ ++RA+ ++ + Q+++LRE        +   E  +R  +R+L +  EA +
Sbjct: 523 DLQKRTRLEQDSLRAEHQEYVQQVSDLREKLRLAEHSLARREQQMREENRQLMRRLEAAE 582

Query: 396 DSTDPTVFE------PLLEEIKNRQTALD 328
              + +  E      PL+ +I++ Q  LD
Sbjct: 583 LRAESSTQELGATTTPLIRQIESLQRTLD 611


>AL031582-1|CAA20895.1| 1082|Drosophila melanogaster EG:118B3.2
           protein.
          Length = 1082

 Score = 29.9 bits (64), Expect = 4.4
 Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 6/103 (5%)
 Frame = -3

Query: 558 DVVSRTRTQRKAVRAQKKQV---LAQLNNLRETEVRELE---STVRLSDRKLFKSWEALK 397
           D++  ++ +R+AV  +++++   LA++   RE    EL+     + L D +L  +    +
Sbjct: 487 DLIKTSQEEREAVLLKQEELGAELAEMKQAREAGQLELQRQRERIALLDSQLDAANAERR 546

Query: 396 DSTDPTVFEPLLEEIKNRQTALDCLVRLIESRRSKLARIPIPL 268
                  F   +EEI  R   +  L  L+E+ RSK+  +   L
Sbjct: 547 QGE--AQFSQAMEEISQRAIEISRLSTLLENARSKIEELEADL 587


>AF181633-1|AAD55419.1|  949|Drosophila melanogaster EG:118B3.2
           protein.
          Length = 949

 Score = 29.9 bits (64), Expect = 4.4
 Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 6/103 (5%)
 Frame = -3

Query: 558 DVVSRTRTQRKAVRAQKKQV---LAQLNNLRETEVRELE---STVRLSDRKLFKSWEALK 397
           D++  ++ +R+AV  +++++   LA++   RE    EL+     + L D +L  +    +
Sbjct: 342 DLIKTSQEEREAVLLKQEELGAELAEMKQAREAGQLELQRQRERIALLDSQLDAANAERR 401

Query: 396 DSTDPTVFEPLLEEIKNRQTALDCLVRLIESRRSKLARIPIPL 268
                  F   +EEI  R   +  L  L+E+ RSK+  +   L
Sbjct: 402 QGE--AQFSQAMEEISQRAIEISRLSTLLENARSKIEELEADL 442


>AE014298-63|AAF45522.2|  950|Drosophila melanogaster CG13366-PA,
           isoform A protein.
          Length = 950

 Score = 29.9 bits (64), Expect = 4.4
 Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 6/103 (5%)
 Frame = -3

Query: 558 DVVSRTRTQRKAVRAQKKQV---LAQLNNLRETEVRELE---STVRLSDRKLFKSWEALK 397
           D++  ++ +R+AV  +++++   LA++   RE    EL+     + L D +L  +    +
Sbjct: 343 DLIKTSQEEREAVLLKQEELGAELAEMKQAREAGQLELQRQRERIALLDSQLDAANAERR 402

Query: 396 DSTDPTVFEPLLEEIKNRQTALDCLVRLIESRRSKLARIPIPL 268
                  F   +EEI  R   +  L  L+E+ RSK+  +   L
Sbjct: 403 QGE--AQFSQAMEEISQRAIEISRLSTLLENARSKIEELEADL 443


>AE014298-62|ABI30962.1| 1094|Drosophila melanogaster CG13366-PB,
           isoform B protein.
          Length = 1094

 Score = 29.9 bits (64), Expect = 4.4
 Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 6/103 (5%)
 Frame = -3

Query: 558 DVVSRTRTQRKAVRAQKKQV---LAQLNNLRETEVRELE---STVRLSDRKLFKSWEALK 397
           D++  ++ +R+AV  +++++   LA++   RE    EL+     + L D +L  +    +
Sbjct: 487 DLIKTSQEEREAVLLKQEELGAELAEMKQAREAGQLELQRQRERIALLDSQLDAANAERR 546

Query: 396 DSTDPTVFEPLLEEIKNRQTALDCLVRLIESRRSKLARIPIPL 268
                  F   +EEI  R   +  L  L+E+ RSK+  +   L
Sbjct: 547 QGE--AQFSQAMEEISQRAIEISRLSTLLENARSKIEELEADL 587


>BT021442-1|AAX33590.1|  334|Drosophila melanogaster GH05177p
           protein.
          Length = 334

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 18/67 (26%), Positives = 31/67 (46%)
 Frame = -3

Query: 438 LSDRKLFKSWEALKDSTDPTVFEPLLEEIKNRQTALDCLVRLIESRRSKLARIPIPLHSL 259
           L+ R  F + E     T+    + L+EE KN+ T +    RL+    + +   P+ L + 
Sbjct: 57  LAARVQFMTDELQNLKTELNELQGLIEEYKNQGTGIPIATRLLRPLPASVQTFPLALATP 116

Query: 258 PPLEPRD 238
           P   PR+
Sbjct: 117 PDDTPRN 123


>AE014298-1385|AAF46535.2|  334|Drosophila melanogaster CG1791-PA
           protein.
          Length = 334

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 18/67 (26%), Positives = 31/67 (46%)
 Frame = -3

Query: 438 LSDRKLFKSWEALKDSTDPTVFEPLLEEIKNRQTALDCLVRLIESRRSKLARIPIPLHSL 259
           L+ R  F + E     T+    + L+EE KN+ T +    RL+    + +   P+ L + 
Sbjct: 57  LAARVQFMTDELQNLKTELNELQGLIEEYKNQGTGIPIATRLLRPLPASVQTFPLALATP 116

Query: 258 PPLEPRD 238
           P   PR+
Sbjct: 117 PDDTPRN 123


>AY121711-1|AAM52038.1|  518|Drosophila melanogaster RH63657p
           protein.
          Length = 518

 Score = 29.1 bits (62), Expect = 7.7
 Identities = 22/101 (21%), Positives = 44/101 (43%)
 Frame = -3

Query: 591 ASLAAEARNARDVVSRTRTQRKAVRAQKKQVLAQLNNLRETEVRELESTVRLSDRKLFKS 412
           +SLAA     R+   +  T+ +A+R +  ++   +  LRETE         ++     ++
Sbjct: 87  SSLAALLHETREQNLKLSTEVEALRQRLNELHGDMELLRETEASNKSRVQAMASENAARN 146

Query: 411 WEALKDSTDPTVFEPLLEEIKNRQTALDCLVRLIESRRSKL 289
            E L+   +   F   LE +K R   L   ++ +   + +L
Sbjct: 147 KEELQWRRERANFICHLEGLKKRNAQLAFDLKAVIDEKEEL 187


>AE014297-2032|AAF55188.1|  518|Drosophila melanogaster CG14868-PA
           protein.
          Length = 518

 Score = 29.1 bits (62), Expect = 7.7
 Identities = 22/101 (21%), Positives = 44/101 (43%)
 Frame = -3

Query: 591 ASLAAEARNARDVVSRTRTQRKAVRAQKKQVLAQLNNLRETEVRELESTVRLSDRKLFKS 412
           +SLAA     R+   +  T+ +A+R +  ++   +  LRETE         ++     ++
Sbjct: 87  SSLAALLHETREQNLKLSTEVEALRQRLNELHGDMELLRETEASNKSRVQAMASENAARN 146

Query: 411 WEALKDSTDPTVFEPLLEEIKNRQTALDCLVRLIESRRSKL 289
            E L+   +   F   LE +K R   L   ++ +   + +L
Sbjct: 147 KEELQWRRERANFICHLEGLKKRNAQLAFDLKAVIDEKEEL 187


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,388,528
Number of Sequences: 53049
Number of extensions: 651835
Number of successful extensions: 2152
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2148
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3901127880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)