Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11k09
         (824 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81515-9|CAH04722.1| 2266|Caenorhabditis elegans Hypothetical pr...    39   0.004
Z81515-3|CAC42289.2| 1693|Caenorhabditis elegans Hypothetical pr...    39   0.004
Z81515-2|CAB04197.2| 1691|Caenorhabditis elegans Hypothetical pr...    39   0.004
U39849-6|AAM81124.1|  642|Caenorhabditis elegans Hypothetical pr...    31   1.0  
U39849-5|AAA81048.2|  663|Caenorhabditis elegans Hypothetical pr...    31   1.0  
AC006633-6|AAK68378.4|  578|Caenorhabditis elegans Hypothetical ...    30   1.7  
U41558-2|AAK39245.2|  457|Caenorhabditis elegans Hypothetical pr...    30   2.3  
Z92830-6|CAB07359.2|  360|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z75551-3|CAA99936.2|  547|Caenorhabditis elegans Hypothetical pr...    29   4.0  
U40413-5|AAK39175.1|  599|Caenorhabditis elegans Hypothetical pr...    29   4.0  
X70833-1|CAA50181.1|  575|Caenorhabditis elegans Cytoplasmic int...    28   7.1  
U29379-3|AAF99979.3|  558|Caenorhabditis elegans Intermediate fi...    28   7.1  
Z68748-12|CAN86588.1|  792|Caenorhabditis elegans Hypothetical p...    28   9.3  
Z68748-10|CAL36500.1|  789|Caenorhabditis elegans Hypothetical p...    28   9.3  
Z68748-9|CAL36499.1|  796|Caenorhabditis elegans Hypothetical pr...    28   9.3  
Z36282-1|CAD45602.1|  424|Caenorhabditis elegans Hypothetical pr...    28   9.3  
U40060-3|AAA81142.2|  974|Caenorhabditis elegans Hypothetical pr...    28   9.3  
AF455271-1|AAL65193.1|  424|Caenorhabditis elegans C21ORF80 prot...    28   9.3  

>Z81515-9|CAH04722.1| 2266|Caenorhabditis elegans Hypothetical protein
            F26H11.2c protein.
          Length = 2266

 Score = 39.1 bits (87), Expect = 0.004
 Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
 Frame = -3

Query: 516  AQKKQVLAQLNNLRETEVR-ELESTVRLSDRKLFKSWEALKDSTDPTVFEPLLEEIKNRQ 340
            A+KK+    L+N R T +R E    V L   ++   W+ ++   + T    L    K ++
Sbjct: 1183 ARKKRPQRSLDNRRATAIRREWVDGVTLKVFEIKDYWKWIRAEAEKTAKRKLEATRKAQK 1242

Query: 339  TALDCLVRLIESRRSK-LARIPIPLHSLPPLEPRDN 235
               D   R I+ ++ + +ARIP+P+HSL P E R+N
Sbjct: 1243 AKEDEERRRIQQQQQRSVARIPVPMHSLIPSE-RNN 1277


>Z81515-3|CAC42289.2| 1693|Caenorhabditis elegans Hypothetical protein
            F26H11.2b protein.
          Length = 1693

 Score = 39.1 bits (87), Expect = 0.004
 Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
 Frame = -3

Query: 516  AQKKQVLAQLNNLRETEVR-ELESTVRLSDRKLFKSWEALKDSTDPTVFEPLLEEIKNRQ 340
            A+KK+    L+N R T +R E    V L   ++   W+ ++   + T    L    K ++
Sbjct: 1183 ARKKRPQRSLDNRRATAIRREWVDGVTLKVFEIKDYWKWIRAEAEKTAKRKLEATRKAQK 1242

Query: 339  TALDCLVRLIESRRSK-LARIPIPLHSLPPLEPRDN 235
               D   R I+ ++ + +ARIP+P+HSL P E R+N
Sbjct: 1243 AKEDEERRRIQQQQQRSVARIPVPMHSLIPSE-RNN 1277


>Z81515-2|CAB04197.2| 1691|Caenorhabditis elegans Hypothetical protein
            F26H11.2a protein.
          Length = 1691

 Score = 39.1 bits (87), Expect = 0.004
 Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
 Frame = -3

Query: 516  AQKKQVLAQLNNLRETEVR-ELESTVRLSDRKLFKSWEALKDSTDPTVFEPLLEEIKNRQ 340
            A+KK+    L+N R T +R E    V L   ++   W+ ++   + T    L    K ++
Sbjct: 1183 ARKKRPQRSLDNRRATAIRREWVDGVTLKVFEIKDYWKWIRAEAEKTAKRKLEATRKAQK 1242

Query: 339  TALDCLVRLIESRRSK-LARIPIPLHSLPPLEPRDN 235
               D   R I+ ++ + +ARIP+P+HSL P E R+N
Sbjct: 1243 AKEDEERRRIQQQQQRSVARIPVPMHSLIPSE-RNN 1277


>U39849-6|AAM81124.1|  642|Caenorhabditis elegans Hypothetical
           protein C06A8.1b protein.
          Length = 642

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = -3

Query: 303 RRSKLARIPIPLHSLPPLEP-RDNDDSCTTYGRKR 202
           R +KL+++ IP H L  LEP + +DD+   YG +R
Sbjct: 259 RIAKLSQLEIPQHILDDLEPIKHDDDAVQKYGTER 293


>U39849-5|AAA81048.2|  663|Caenorhabditis elegans Hypothetical
           protein C06A8.1a protein.
          Length = 663

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = -3

Query: 303 RRSKLARIPIPLHSLPPLEP-RDNDDSCTTYGRKR 202
           R +KL+++ IP H L  LEP + +DD+   YG +R
Sbjct: 280 RIAKLSQLEIPQHILDDLEPIKHDDDAVQKYGTER 314


>AC006633-6|AAK68378.4|  578|Caenorhabditis elegans Hypothetical
           protein F35B3.7 protein.
          Length = 578

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/61 (26%), Positives = 31/61 (50%)
 Frame = -3

Query: 570 RNARDVVSRTRTQRKAVRAQKKQVLAQLNNLRETEVRELESTVRLSDRKLFKSWEALKDS 391
           +NA + ++ T+ +RK++  +K      L   R      ++ TV+L D+    S  ++K S
Sbjct: 89  KNATECLAETKIERKSICREKTHKSIVLPQPRFYTCERIQKTVKLPDKSKSSSAMSIKKS 148

Query: 390 T 388
           T
Sbjct: 149 T 149


>U41558-2|AAK39245.2|  457|Caenorhabditis elegans Hypothetical
           protein K02B2.1 protein.
          Length = 457

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
 Frame = -3

Query: 417 KSWEALKDSTDPTVFEPLLEE---IKNRQTALDCLVRLIESRR-SKLARIPIPLHSLPPL 250
           +S+E +    +P + E   +    + + Q  L C++     R  S+L  I IPLHSL  L
Sbjct: 362 ESYEDVVSRLEPVIMELERQANVLVVSHQAVLRCVLAYFYDRPLSELPYIDIPLHSLVKL 421

Query: 249 EPRDNDDSCTTY 214
            PR      T Y
Sbjct: 422 TPRAYHCDSTIY 433


>Z92830-6|CAB07359.2|  360|Caenorhabditis elegans Hypothetical
           protein F11A5.7 protein.
          Length = 360

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = -3

Query: 558 DVVSRTRTQRKAVRAQKKQVLAQLNNLRETEVRELESTVRLSDRK-LFKSWEALKDSTD 385
           D+V+ +  + K VR+     +    N + T  R+++  +RL+D   LFKSW  + D  D
Sbjct: 264 DLVNISFPKLKRVRSDNLHSIVFTGNNQNTS-RDVDGCIRLADDLGLFKSWSPIFDGKD 321


>Z75551-3|CAA99936.2|  547|Caenorhabditis elegans Hypothetical
           protein W04D2.6b protein.
          Length = 547

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = -2

Query: 763 NRPKVWRTIPYSRSAAGILRSASSFSGSNQEHPVLCEGHWRIPQRARTSVRAR 605
           NRP+  +    SRS++    S+ S S S++          R PQR+RTS R R
Sbjct: 87  NRPEASKRSRRSRSSSN--SSSESDSSSSRSSSYSSRSRSRTPQRSRTSKRRR 137


>U40413-5|AAK39175.1|  599|Caenorhabditis elegans Hypothetical
           protein C18B2.6 protein.
          Length = 599

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +2

Query: 296 ERRDSIKRTRQSSAVCLFLISSSNGSKTVGSVESLSASQLLN 421
           +RR +I+RTR   A C+  ++ +    TV    SL+ SQ L+
Sbjct: 4   QRRSTIRRTRFDEASCVMYMNGNFPETTVVRSHSLTQSQSLS 45


>X70833-1|CAA50181.1|  575|Caenorhabditis elegans Cytoplasmic
           intermediate filament(IF) protein protein.
          Length = 575

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 14/52 (26%), Positives = 32/52 (61%)
 Frame = -3

Query: 576 EARNARDVVSRTRTQRKAVRAQKKQVLAQLNNLRETEVRELESTVRLSDRKL 421
           E R+A+D+++ +  +R  +  Q K+++ +LNN R  ++ E E    ++ ++L
Sbjct: 123 ELRSAKDLIADSDKERAQLEDQIKKLVEELNNYR-NKLHEAERGADVTRKEL 173


>U29379-3|AAF99979.3|  558|Caenorhabditis elegans Intermediate
           filament, a protein 4 protein.
          Length = 558

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 14/52 (26%), Positives = 32/52 (61%)
 Frame = -3

Query: 576 EARNARDVVSRTRTQRKAVRAQKKQVLAQLNNLRETEVRELESTVRLSDRKL 421
           E R+A+D+++ +  +R  +  Q K+++ +LNN R  ++ E E    ++ ++L
Sbjct: 104 ELRSAKDLIADSDKERAQLEDQIKKLVEELNNYR-NKLHEAERGADVTRKEL 154


>Z68748-12|CAN86588.1|  792|Caenorhabditis elegans Hypothetical
           protein F13H10.4c protein.
          Length = 792

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = -1

Query: 605 RPEKWLHWPR--KHGTHGTSYRARGHKGKLCAHRRSKFLLNSI 483
           R EKW HW R  + G   T+YR RG    +      K L + +
Sbjct: 487 RLEKWFHWIRITQSGPTRTTYRWRGRNETIKTELNPKTLSSGL 529


>Z68748-10|CAL36500.1|  789|Caenorhabditis elegans Hypothetical
           protein F13H10.4b protein.
          Length = 789

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = -1

Query: 605 RPEKWLHWPR--KHGTHGTSYRARGHKGKLCAHRRSKFLLNSI 483
           R EKW HW R  + G   T+YR RG    +      K L + +
Sbjct: 484 RLEKWFHWIRITQSGPTRTTYRWRGRNETIKTELNPKTLSSGL 526


>Z68748-9|CAL36499.1|  796|Caenorhabditis elegans Hypothetical
           protein F13H10.4a protein.
          Length = 796

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = -1

Query: 605 RPEKWLHWPR--KHGTHGTSYRARGHKGKLCAHRRSKFLLNSI 483
           R EKW HW R  + G   T+YR RG    +      K L + +
Sbjct: 491 RLEKWFHWIRITQSGPTRTTYRWRGRNETIKTELNPKTLSSGL 533


>Z36282-1|CAD45602.1|  424|Caenorhabditis elegans Hypothetical
           protein K10G9.3 protein.
          Length = 424

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
 Frame = -3

Query: 591 ASLAAEARNARDVVSRTRTQRKAVRAQKKQVLAQLN-----NLRETEVRELESTVR 439
           A   A A N+   VSR  + R +V A+KK +L  +N     NLR      + +TVR
Sbjct: 14  AEKIAFAENSDQTVSRVDSNRYSVAAEKKFLLYDVNFGEGFNLRRDVYMRVANTVR 69


>U40060-3|AAA81142.2|  974|Caenorhabditis elegans Hypothetical
           protein F38B6.4 protein.
          Length = 974

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +1

Query: 289 ELRTTRLNQTHKTVERGLPVLDFLKQWFEDSR-ICGVFERLPTLEQLSVRKSNG 447
           +L T++    H   E GLP  DF+    E+ + +  VFERLP   + SV K++G
Sbjct: 97  QLETSKSFSKHFMKEYGLPTADFVTVSIENVKSLDCVFERLPW--KNSVVKADG 148


>AF455271-1|AAL65193.1|  424|Caenorhabditis elegans C21ORF80
           protein.
          Length = 424

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
 Frame = -3

Query: 591 ASLAAEARNARDVVSRTRTQRKAVRAQKKQVLAQLN-----NLRETEVRELESTVR 439
           A   A A N+   VSR  + R +V A+KK +L  +N     NLR      + +TVR
Sbjct: 14  AEKIAFAENSDQTVSRVDSNRYSVAAEKKFLLYDVNFGEGFNLRRDVYMRVANTVR 69


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,083,970
Number of Sequences: 27780
Number of extensions: 318942
Number of successful extensions: 1045
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1045
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2040452812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)