Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11k06
         (767 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53332-5|AAK31535.2|  821|Caenorhabditis elegans Related to yeas...    28   8.4  
DQ178636-1|ABD75715.1|  826|Caenorhabditis elegans vacuolar prot...    28   8.4  
AF022976-1|AAC69075.1|  154|Caenorhabditis elegans Prion-like-(q...    28   8.4  
AC024845-1|AAF60850.2|  347|Caenorhabditis elegans Hypothetical ...    28   8.4  

>U53332-5|AAK31535.2|  821|Caenorhabditis elegans Related to yeast
           vacuolar proteinsorting factor protein 35 protein.
          Length = 821

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = -1

Query: 686 VNFQMNKILNIISIMYKNILIINNVKDIIEVIIFCDF 576
           V  ++ K+LNI    YKN+L ++ + + I+V+ + D+
Sbjct: 411 VGRELTKLLNIPIDEYKNVLRLSQLPEYIKVMNYFDY 447


>DQ178636-1|ABD75715.1|  826|Caenorhabditis elegans vacuolar protein
           sorting factor protein.
          Length = 826

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = -1

Query: 686 VNFQMNKILNIISIMYKNILIINNVKDIIEVIIFCDF 576
           V  ++ K+LNI    YKN+L ++ + + I+V+ + D+
Sbjct: 416 VGRELTKLLNIPIDEYKNVLRLSQLPEYIKVMNYFDY 452


>AF022976-1|AAC69075.1|  154|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 60
           protein.
          Length = 154

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -1

Query: 743 YLTTKKNYQISRQKQNQEYVNF-QMNKILN 657
           Y    KNYQ+S+ ++NQ+   + QMN + N
Sbjct: 35  YFAIAKNYQLSQMQKNQQLQQWAQMNNLSN 64


>AC024845-1|AAF60850.2|  347|Caenorhabditis elegans Hypothetical
           protein Y65B4BL.3 protein.
          Length = 347

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = +2

Query: 164 PDLSDYYRISFVNFK*CIRTRQCITQRMLLILW*NLNTLSSRNQPTRKDEKDD 322
           P LSD YR+S  N++    TR  ++    +  W   NT+ S N   ++D+ D+
Sbjct: 291 PLLSDSYRLSVNNWQAANETRGTVSSYSQIRGW--NNTIRSTNTMRQRDDVDN 341


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,767,170
Number of Sequences: 27780
Number of extensions: 243862
Number of successful extensions: 630
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)