Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11k06
(767 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
M29492-1|AAA27727.1| 74|Apis mellifera protein ( Bee homeobox-... 24 1.4
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 24 1.8
D79207-1|BAA23639.1| 432|Apis mellifera milk protein protein. 23 2.4
AF388203-1|AAM73637.1| 432|Apis mellifera major royal jelly pro... 23 2.4
AF000633-1|AAC61895.1| 432|Apis mellifera major royal jelly pro... 23 2.4
DQ325090-1|ABD14104.1| 178|Apis mellifera complementary sex det... 22 7.2
DQ325083-1|ABD14097.1| 189|Apis mellifera complementary sex det... 22 7.2
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 22 7.2
AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex det... 22 7.2
AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex det... 22 7.2
DQ855484-1|ABH88171.1| 130|Apis mellifera chemosensory protein ... 21 9.5
DQ325115-1|ABD14129.1| 185|Apis mellifera complementary sex det... 21 9.5
AJ973401-1|CAJ01448.1| 130|Apis mellifera hypothetical protein ... 21 9.5
AF481963-1|AAN59784.1| 130|Apis mellifera antennal-specific pro... 21 9.5
>M29492-1|AAA27727.1| 74|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone H40. ).
Length = 74
Score = 24.2 bits (50), Expect = 1.4
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -1
Query: 500 SLERKIKTTKTLEICNVCNM 441
+LE K KTT+ L +C N+
Sbjct: 22 ALENKFKTTRYLSVCERLNL 41
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 23.8 bits (49), Expect = 1.8
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +3
Query: 561 IVLYRKITKYYYFNYILNIV 620
+V+ R+ T YY+FN I+ V
Sbjct: 224 VVIIRRRTLYYFFNLIVPCV 243
>D79207-1|BAA23639.1| 432|Apis mellifera milk protein protein.
Length = 432
Score = 23.4 bits (48), Expect = 2.4
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -3
Query: 84 IVNKNYIMSIVNTICEHFDHEKT 16
I+N N I+NT CE+ D+++T
Sbjct: 402 IMNANVNELILNTRCENPDNDRT 424
>AF388203-1|AAM73637.1| 432|Apis mellifera major royal jelly
protein MRJP1 protein.
Length = 432
Score = 23.4 bits (48), Expect = 2.4
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -3
Query: 84 IVNKNYIMSIVNTICEHFDHEKT 16
I+N N I+NT CE+ D+++T
Sbjct: 402 IMNANVNELILNTRCENPDNDRT 424
>AF000633-1|AAC61895.1| 432|Apis mellifera major royal jelly
protein MRJP1 protein.
Length = 432
Score = 23.4 bits (48), Expect = 2.4
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -3
Query: 84 IVNKNYIMSIVNTICEHFDHEKT 16
I+N N I+NT CE+ D+++T
Sbjct: 402 IMNANVNELILNTRCENPDNDRT 424
>DQ325090-1|ABD14104.1| 178|Apis mellifera complementary sex
determiner protein.
Length = 178
Score = 21.8 bits (44), Expect = 7.2
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +3
Query: 585 KYYYFNYILNI 617
K YY NYI+NI
Sbjct: 103 KLYYKNYIINI 113
>DQ325083-1|ABD14097.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 21.8 bits (44), Expect = 7.2
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +3
Query: 585 KYYYFNYILNI 617
K YY NYI+NI
Sbjct: 114 KLYYKNYIINI 124
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 21.8 bits (44), Expect = 7.2
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +3
Query: 669 IHLKINVLLILFLPRNL 719
I L ++LI+F+PRN+
Sbjct: 405 ISLVYIIMLIIFIPRNI 421
>AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex
determiner protein.
Length = 419
Score = 21.8 bits (44), Expect = 7.2
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +3
Query: 585 KYYYFNYILNI 617
K YY NYI+NI
Sbjct: 344 KLYYKNYIINI 354
>AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex
determiner protein.
Length = 413
Score = 21.8 bits (44), Expect = 7.2
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +3
Query: 585 KYYYFNYILNI 617
K YY NYI+NI
Sbjct: 339 KLYYKNYIINI 349
>DQ855484-1|ABH88171.1| 130|Apis mellifera chemosensory protein 3
protein.
Length = 130
Score = 21.4 bits (43), Expect = 9.5
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = -2
Query: 733 LKKIIKFLGKNK 698
+KK+IKFL +NK
Sbjct: 87 IKKVIKFLVENK 98
>DQ325115-1|ABD14129.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.4 bits (43), Expect = 9.5
Identities = 13/40 (32%), Positives = 15/40 (37%)
Frame = -1
Query: 764 NTSLVSRYLTTKKNYQISRQKQNQEYVNFQMNKILNIISI 645
N SL + Y NY N Y Q I+NI I
Sbjct: 85 NNSLSNNY-NYNNNYNNYNNNYNTNYKKLQYYNIINIEQI 123
>AJ973401-1|CAJ01448.1| 130|Apis mellifera hypothetical protein
protein.
Length = 130
Score = 21.4 bits (43), Expect = 9.5
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = -2
Query: 733 LKKIIKFLGKNK 698
+KK+IKFL +NK
Sbjct: 87 IKKVIKFLVENK 98
>AF481963-1|AAN59784.1| 130|Apis mellifera antennal-specific
protein 3c precursor protein.
Length = 130
Score = 21.4 bits (43), Expect = 9.5
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = -2
Query: 733 LKKIIKFLGKNK 698
+KK+IKFL +NK
Sbjct: 87 IKKVIKFLVENK 98
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,395
Number of Sequences: 438
Number of extensions: 3521
Number of successful extensions: 24
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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