Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11k05
         (714 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi...    29   0.87 
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc...    28   1.5  
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    27   2.0  
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt...    26   4.7  
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    26   6.1  

>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 606

 Score = 28.7 bits (61), Expect = 0.87
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = -2

Query: 143 NRKQVIRKKIKLKRQINRRKKSNLKIKQK 57
           +RK V R +    RQIN  KKSNLK+ +K
Sbjct: 529 SRKAVWRMRPASVRQINFLKKSNLKLDEK 557


>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 16/65 (24%), Positives = 28/65 (43%)
 Frame = -1

Query: 540 RIQELCSCENXPYNTGDQIQFQLPKDFHNSDTYTSNLKYTHKGYDNTCDKRDRKILSVTP 361
           R QE         +TGD +      D     T +S + +T +GY ++ D R   I + + 
Sbjct: 74  RAQEAAEAAANGGSTGDDVNATNANDATVPATVSSEVTHTSEGYADSNDSRPSSISNSSE 133

Query: 360 TNCPV 346
           +  P+
Sbjct: 134 SPAPI 138


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1328

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 714  PSPTSSILSSKRSYQPIPYSHYQNEVPK 631
            PSP SS + +KR + P P+S +Q   P+
Sbjct: 1244 PSPPSSSVWNKREHHPKPFSLHQVPPPE 1271


>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
           subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 387 PFYRKYCRSLYECILNLKCKYQNYGNLSVTGIVSDLL 497
           PFY +    LYE IL  K  Y +Y + +   ++S LL
Sbjct: 396 PFYSENPMKLYENILEGKVNYPSYFSPASIDLLSHLL 432


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +3

Query: 462 NLSVTGIVSDLLYCKXX-FHRSTIPVSYRTFPFVQPSWFLG 581
           NL++T +V   + C     H   IP +Y TF    PSW  G
Sbjct: 788 NLTITEVVKAEVTCLYDDIHEGIIP-AYNTFVEHLPSWVAG 827


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,544,633
Number of Sequences: 5004
Number of extensions: 49447
Number of successful extensions: 154
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)