Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11k05
         (714 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0742 + 24027506-24027721,24028835-24029004,24029893-240300...    29   3.7  
03_05_1111 - 30479793-30479823,30479887-30479978,30480261-304804...    29   4.8  
02_01_0475 + 3422629-3422695,3422960-3423216                           29   4.8  
09_02_0302 - 7086017-7086124,7086125-7086796,7087511-7088070,708...    28   8.5  

>06_03_0742 + 24027506-24027721,24028835-24029004,24029893-24030052,
            24030162-24030455,24031490-24031717,24031827-24032006,
            24032079-24032238,24032591-24032617,24033426-24033613,
            24034269-24034532,24035123-24035218,24035311-24035399,
            24035473-24035620,24035842-24036051,24036141-24036440,
            24037906-24038248,24038747-24038952,24039071-24039273,
            24040021-24040117,24040148-24040222,24040328-24040602,
            24041116-24041256,24041469-24042339,24042481-24042520,
            24042605-24043050
          Length = 1808

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 22/88 (25%), Positives = 38/88 (43%)
 Frame = -1

Query: 585  RVPKTTKVERMGKYDRIQELCSCENXPYNTGDQIQFQLPKDFHNSDTYTSNLKYTHKGYD 406
            R  K  K E   +  R +E    E+     GD+ +   PK+ H ++  T + K  H+  D
Sbjct: 951  RPKKDDKAEAKAEDIRPKEGDEAEDTRPKEGDEAEDTRPKEDHEAEDST-HPKEDHEAED 1009

Query: 405  NTCDKRDRKILSVTPTNCPVPVAMEKIL 322
            +T  K D +          + + +EKI+
Sbjct: 1010 STHPKEDHEAEGDDEDQMKLQMEVEKII 1037


>03_05_1111 -
           30479793-30479823,30479887-30479978,30480261-30480410,
           30482229-30482354,30482563-30482628,30483134-30483214,
           30483310-30483422,30483553-30483721,30484253-30484330,
           30485489-30485752,30486239-30486379,30486548-30486759,
           30486819-30486940,30487281-30487398,30487925-30487997
          Length = 611

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -1

Query: 477 QLPKDFHNSDTYT-SNLKYTHKGYDNTCDKRDRKILSVTPTN 355
           +L + +HNS  +  ++L + H  Y N  +K+    L V PTN
Sbjct: 47  RLQRGYHNSGKFDLTDLTHPHIWYPNAREKKRNVFLHVGPTN 88


>02_01_0475 + 3422629-3422695,3422960-3423216
          Length = 107

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -2

Query: 140 RKQVIRKKIKLKRQINRRKKSNLKIKQKNNYTTSHYTN 27
           +K+  +KK K K++  ++KK   K K+K N  +S  TN
Sbjct: 43  KKKKKKKKKKKKKKKKKKKKKKKKKKKKKNKLSSAVTN 80


>09_02_0302 - 7086017-7086124,7086125-7086796,7087511-7088070,
            7088754-7089131,7089357-7089821,7090022-7090127,
            7090219-7090294,7090407-7090648,7090824-7090904,
            7091013-7091205,7091336-7091558,7091611-7091646,
            7091694-7091790
          Length = 1078

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
 Frame = -1

Query: 618  FTKINANELKIRVPKTTKVERMGKYDRIQE----LCSCENXPYNTGDQIQFQLPKDFHNS 451
            F    A+ L  ++P+  K +R    D + +    + +C    +N    I   +   +HN+
Sbjct: 836  FGTFRADHLSSKIPEQAKADREAFSDTLSKSAAVMATCAALLFNAALNIFLNVQAIYHNN 895

Query: 450  DTYTSN 433
            +T T+N
Sbjct: 896  NTSTNN 901


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,025,437
Number of Sequences: 37544
Number of extensions: 267947
Number of successful extensions: 695
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)