Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11k05
         (714 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z67754-1|CAA91751.1|  483|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U39849-4|AAA81047.1|  349|Caenorhabditis elegans Hypothetical pr...    29   4.4  
Z34533-1|CAA84302.3|  730|Caenorhabditis elegans Hypothetical pr...    28   5.8  

>Z67754-1|CAA91751.1|  483|Caenorhabditis elegans Hypothetical
           protein C34E11.1 protein.
          Length = 483

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = -1

Query: 531 ELCSCENXPYNTGDQIQFQLPKDFHNSDTYTSNLKYTHKGYDNTCDKRDRKILSVT 364
           EL   E    N+ D+ +++   D ++     S+ K ++ GYDN  DK D    SVT
Sbjct: 163 ELLQAERQKANSDDKSKYR-GFDQYDMKMSGSSFKSSNSGYDNKWDKEDSFSSSVT 217


>U39849-4|AAA81047.1|  349|Caenorhabditis elegans Hypothetical
           protein C06A8.6 protein.
          Length = 349

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 11/47 (23%), Positives = 24/47 (51%)
 Frame = -1

Query: 651 YQNEVPKYDEIFTKINANELKIRVPKTTKVERMGKYDRIQELCSCEN 511
           Y N++ K + + + +N   L +   + TK+E + K  +++ L    N
Sbjct: 84  YDNQITKVENLDSLVNLESLDLSFNRITKIENLEKLTKLKTLFFVHN 130


>Z34533-1|CAA84302.3|  730|Caenorhabditis elegans Hypothetical
           protein B0285.1 protein.
          Length = 730

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 714 PSPTSSILSSKRSYQPIPYSHYQN 643
           P PT +  +S  ++QP+P S YQ+
Sbjct: 703 PPPTQASSTSHNNHQPVPQSQYQS 726


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,071,871
Number of Sequences: 27780
Number of extensions: 280269
Number of successful extensions: 908
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)