Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11k05
(714 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex det... 29 0.033
DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex det... 29 0.033
DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex det... 29 0.033
DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex det... 28 0.076
AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 27 0.23
AY375535-1|AAQ82648.1| 147|Apis mellifera doublesex protein. 25 0.71
DQ325076-1|ABD14090.1| 191|Apis mellifera complementary sex det... 24 1.2
DQ325102-1|ABD14116.1| 183|Apis mellifera complementary sex det... 24 1.6
AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex det... 24 1.6
AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex det... 24 1.6
DQ325101-1|ABD14115.1| 182|Apis mellifera complementary sex det... 23 2.2
DQ325100-1|ABD14114.1| 183|Apis mellifera complementary sex det... 23 2.2
DQ325099-1|ABD14113.1| 183|Apis mellifera complementary sex det... 23 2.2
DQ325098-1|ABD14112.1| 183|Apis mellifera complementary sex det... 23 2.2
DQ325097-1|ABD14111.1| 183|Apis mellifera complementary sex det... 23 2.2
DQ325096-1|ABD14110.1| 183|Apis mellifera complementary sex det... 23 2.2
DQ325095-1|ABD14109.1| 183|Apis mellifera complementary sex det... 23 2.2
DQ325113-1|ABD14127.1| 185|Apis mellifera complementary sex det... 23 2.9
DQ325112-1|ABD14126.1| 185|Apis mellifera complementary sex det... 23 2.9
DQ325111-1|ABD14125.1| 185|Apis mellifera complementary sex det... 23 2.9
DQ325110-1|ABD14124.1| 185|Apis mellifera complementary sex det... 23 2.9
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 23 2.9
AB086196-1|BAD06465.1| 289|Apis mellifera Period protein. 23 2.9
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 23 2.9
DQ325130-1|ABD14144.1| 174|Apis mellifera complementary sex det... 22 5.0
DQ325129-1|ABD14143.1| 174|Apis mellifera complementary sex det... 22 5.0
DQ325128-1|ABD14142.1| 174|Apis mellifera complementary sex det... 22 5.0
DQ325127-1|ABD14141.1| 174|Apis mellifera complementary sex det... 22 5.0
DQ325126-1|ABD14140.1| 174|Apis mellifera complementary sex det... 22 5.0
DQ325125-1|ABD14139.1| 174|Apis mellifera complementary sex det... 22 5.0
DQ325077-1|ABD14091.1| 181|Apis mellifera complementary sex det... 22 5.0
AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex det... 22 5.0
DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chlor... 22 6.6
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 22 6.6
DQ325090-1|ABD14104.1| 178|Apis mellifera complementary sex det... 22 6.6
AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex det... 22 6.6
AF004842-1|AAD01205.1| 598|Apis mellifera major royal jelly pro... 21 8.8
>DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 29.5 bits (63), Expect = 0.033
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -1
Query: 468 KDFHNSDTYTSNLKYTHKGYDNTCDKRDRKILSVTPTNCPVPV 340
K HN++ Y N Y + Y+N C K I + PVPV
Sbjct: 88 KTIHNNNNYKYN--YNNNNYNNNCKKLYYNINYIEQIPIPVPV 128
>DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 29.5 bits (63), Expect = 0.033
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -1
Query: 468 KDFHNSDTYTSNLKYTHKGYDNTCDKRDRKILSVTPTNCPVPV 340
K HN++ Y N Y + Y+N C K I + PVPV
Sbjct: 88 KTIHNNNNYKYN--YNNNNYNNNCKKLYYNINYIEQIPIPVPV 128
>DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 29.5 bits (63), Expect = 0.033
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -1
Query: 468 KDFHNSDTYTSNLKYTHKGYDNTCDKRDRKILSVTPTNCPVPV 340
K HN++ Y N Y + Y+N C K I + PVPV
Sbjct: 88 KTIHNNNNYKYN--YNNNNYNNNCKKLYYNINYIEQIPIPVPV 128
>DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex
determiner protein.
Length = 186
Score = 28.3 bits (60), Expect = 0.076
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = -1
Query: 468 KDFHNSDTYTSNLKYTHKGYDNTCDKRDRKILSVTPTNCPVPV 340
+ HN++ Y N Y + Y+N C K I + PVPV
Sbjct: 88 RTIHNNNNYKYN--YNNNNYNNNCKKLYYNINYIEQIPVPVPV 128
>AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex
determiner protein.
Length = 428
Score = 26.6 bits (56), Expect = 0.23
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -1
Query: 459 HNSDTYTSNLKYTHKGYDNTCDKRDRKILSVTPTNCPVPV 340
+N++ Y +N Y + Y+N C K I+++ PVPV
Sbjct: 333 YNNNNYNNN-NYNNN-YNNNCKKLYYNIINIEQIPVPVPV 370
>AY375535-1|AAQ82648.1| 147|Apis mellifera doublesex protein.
Length = 147
Score = 25.0 bits (52), Expect = 0.71
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = -2
Query: 143 NRKQVIRKKIKLKRQINRRK 84
NR+QV+R+ +KLKR + + K
Sbjct: 14 NRQQVMRQNMKLKRHLAQDK 33
>DQ325076-1|ABD14090.1| 191|Apis mellifera complementary sex
determiner protein.
Length = 191
Score = 24.2 bits (50), Expect = 1.2
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
Frame = -2
Query: 125 RKKIKLKRQINRRKK-----SNLKIKQKNNYTTSHYTN*HYS 15
R + + +R+ +R K SN I NNY ++Y N +Y+
Sbjct: 66 RSRDRTERERSREPKIISSLSNKTIHNNNNYNNNNYNNYNYN 107
>DQ325102-1|ABD14116.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 23.8 bits (49), Expect = 1.6
Identities = 9/37 (24%), Positives = 20/37 (54%)
Frame = -2
Query: 137 KQVIRKKIKLKRQINRRKKSNLKIKQKNNYTTSHYTN 27
++ +++ + +R+ R K+ + NNY S+Y N
Sbjct: 60 RETSKERSRDRRERERSKEPKIVSSLSNNYNYSNYNN 96
>AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 23.8 bits (49), Expect = 1.6
Identities = 12/41 (29%), Positives = 17/41 (41%)
Frame = -2
Query: 149 RNNRKQVIRKKIKLKRQINRRKKSNLKIKQKNNYTTSHYTN 27
R RK K + + + R + KI NNY +Y N
Sbjct: 276 REYRKYRETSKGRSRDRTERERSKETKIISSNNYNYKNYNN 316
>AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 23.8 bits (49), Expect = 1.6
Identities = 12/41 (29%), Positives = 17/41 (41%)
Frame = -2
Query: 149 RNNRKQVIRKKIKLKRQINRRKKSNLKIKQKNNYTTSHYTN 27
R RK K + + + R + KI NNY +Y N
Sbjct: 287 REYRKYRETSKGRSRDRTERERSKETKIISSNNYNYKNYNN 327
>DQ325101-1|ABD14115.1| 182|Apis mellifera complementary sex
determiner protein.
Length = 182
Score = 23.4 bits (48), Expect = 2.2
Identities = 9/37 (24%), Positives = 20/37 (54%)
Frame = -2
Query: 137 KQVIRKKIKLKRQINRRKKSNLKIKQKNNYTTSHYTN 27
++ +++ + +R+ R K+ + NNY S+Y N
Sbjct: 60 RETSKERSRDRRERERSKEPKIISSLSNNYNYSNYNN 96
>DQ325100-1|ABD14114.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 23.4 bits (48), Expect = 2.2
Identities = 9/37 (24%), Positives = 20/37 (54%)
Frame = -2
Query: 137 KQVIRKKIKLKRQINRRKKSNLKIKQKNNYTTSHYTN 27
++ +++ + +R+ R K+ + NNY S+Y N
Sbjct: 60 RETSKERSRDRRERERSKEPKIISSLSNNYNYSNYNN 96
>DQ325099-1|ABD14113.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 23.4 bits (48), Expect = 2.2
Identities = 9/37 (24%), Positives = 20/37 (54%)
Frame = -2
Query: 137 KQVIRKKIKLKRQINRRKKSNLKIKQKNNYTTSHYTN 27
++ +++ + +R+ R K+ + NNY S+Y N
Sbjct: 60 RETSKERSRDRRERERSKEPKIISSLSNNYNYSNYNN 96
>DQ325098-1|ABD14112.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 23.4 bits (48), Expect = 2.2
Identities = 9/37 (24%), Positives = 20/37 (54%)
Frame = -2
Query: 137 KQVIRKKIKLKRQINRRKKSNLKIKQKNNYTTSHYTN 27
++ +++ + +R+ R K+ + NNY S+Y N
Sbjct: 60 RETSKERSRDRRERERSKEPKIISSLSNNYNYSNYNN 96
>DQ325097-1|ABD14111.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 23.4 bits (48), Expect = 2.2
Identities = 9/37 (24%), Positives = 20/37 (54%)
Frame = -2
Query: 137 KQVIRKKIKLKRQINRRKKSNLKIKQKNNYTTSHYTN 27
++ +++ + +R+ R K+ + NNY S+Y N
Sbjct: 60 RETSKERSRDRRERERSKEPKIISSLSNNYNYSNYNN 96
>DQ325096-1|ABD14110.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 23.4 bits (48), Expect = 2.2
Identities = 9/37 (24%), Positives = 20/37 (54%)
Frame = -2
Query: 137 KQVIRKKIKLKRQINRRKKSNLKIKQKNNYTTSHYTN 27
++ +++ + +R+ R K+ + NNY S+Y N
Sbjct: 60 RETSKERSRDRRERERSKEPKIISSLSNNYNYSNYNN 96
>DQ325095-1|ABD14109.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 23.4 bits (48), Expect = 2.2
Identities = 9/37 (24%), Positives = 20/37 (54%)
Frame = -2
Query: 137 KQVIRKKIKLKRQINRRKKSNLKIKQKNNYTTSHYTN 27
++ +++ + +R+ R K+ + NNY S+Y N
Sbjct: 60 RETSKERSRDRRERERSKEPKIISSLSNNYNYSNYNN 96
>DQ325113-1|ABD14127.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 23.0 bits (47), Expect = 2.9
Identities = 9/37 (24%), Positives = 20/37 (54%)
Frame = -2
Query: 137 KQVIRKKIKLKRQINRRKKSNLKIKQKNNYTTSHYTN 27
++ R++ + +++ R K+ + NNY S+Y N
Sbjct: 60 RETSRERSRDRKERERSKEPKIISSLSNNYKYSNYNN 96
Score = 22.6 bits (46), Expect = 3.8
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = -2
Query: 80 SNLKIKQKNNYTTSHYTN*HY 18
+N K NNY ++Y N +Y
Sbjct: 87 NNYKYSNYNNYNNNNYNNNNY 107
>DQ325112-1|ABD14126.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 23.0 bits (47), Expect = 2.9
Identities = 9/37 (24%), Positives = 20/37 (54%)
Frame = -2
Query: 137 KQVIRKKIKLKRQINRRKKSNLKIKQKNNYTTSHYTN 27
++ R++ + +++ R K+ + NNY S+Y N
Sbjct: 60 RETSRERSRDRKERERSKEPKIISSLSNNYKYSNYNN 96
Score = 22.6 bits (46), Expect = 3.8
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = -2
Query: 80 SNLKIKQKNNYTTSHYTN*HY 18
+N K NNY ++Y N +Y
Sbjct: 87 NNYKYSNYNNYNNNNYNNNNY 107
>DQ325111-1|ABD14125.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 23.0 bits (47), Expect = 2.9
Identities = 9/37 (24%), Positives = 20/37 (54%)
Frame = -2
Query: 137 KQVIRKKIKLKRQINRRKKSNLKIKQKNNYTTSHYTN 27
++ R++ + +++ R K+ + NNY S+Y N
Sbjct: 60 RETSRERSRDRKERERSKEPKIISSLSNNYKYSNYNN 96
Score = 22.6 bits (46), Expect = 3.8
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = -2
Query: 80 SNLKIKQKNNYTTSHYTN*HY 18
+N K NNY ++Y N +Y
Sbjct: 87 NNYKYSNYNNYNNNNYNNNNY 107
>DQ325110-1|ABD14124.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 23.0 bits (47), Expect = 2.9
Identities = 9/37 (24%), Positives = 20/37 (54%)
Frame = -2
Query: 137 KQVIRKKIKLKRQINRRKKSNLKIKQKNNYTTSHYTN 27
++ R++ + +++ R K+ + NNY S+Y N
Sbjct: 60 RETSRERSRDRKERERSKEPKIISSLSNNYKYSNYNN 96
Score = 22.6 bits (46), Expect = 3.8
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = -2
Query: 80 SNLKIKQKNNYTTSHYTN*HY 18
+N K NNY ++Y N +Y
Sbjct: 87 NNYKYSNYNNYNNNNYNNNNY 107
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 23.0 bits (47), Expect = 2.9
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = -1
Query: 441 TSNLKYTHKGYDNTC 397
T N K + GY NTC
Sbjct: 7 TENAKVSDSGYSNTC 21
>AB086196-1|BAD06465.1| 289|Apis mellifera Period protein.
Length = 289
Score = 23.0 bits (47), Expect = 2.9
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = -1
Query: 441 TSNLKYTHKGYDNTC 397
T N K + GY NTC
Sbjct: 7 TENAKVSDSGYSNTC 21
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 23.0 bits (47), Expect = 2.9
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = -1
Query: 615 TKINANELKI-RVPKTTKVERMGKYDRIQELCSCENXP 505
TK E+ + R P T + R+ K + +QE SC P
Sbjct: 337 TKERTEEVALDRTPVTQGLLRVKKEEELQEAPSCGGGP 374
>DQ325130-1|ABD14144.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 22.2 bits (45), Expect = 5.0
Identities = 9/40 (22%), Positives = 21/40 (52%)
Frame = -2
Query: 137 KQVIRKKIKLKRQINRRKKSNLKIKQKNNYTTSHYTN*HY 18
++ +++ + + + R K+ + NNY S+Y N +Y
Sbjct: 60 RKTSKERSRDRTERERSKEPKIISSLSNNYNYSNYNNNNY 99
>DQ325129-1|ABD14143.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 22.2 bits (45), Expect = 5.0
Identities = 9/40 (22%), Positives = 21/40 (52%)
Frame = -2
Query: 137 KQVIRKKIKLKRQINRRKKSNLKIKQKNNYTTSHYTN*HY 18
++ +++ + + + R K+ + NNY S+Y N +Y
Sbjct: 60 RKTSKERSRDRTERERSKEPKIISSLSNNYNYSNYNNNNY 99
>DQ325128-1|ABD14142.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 22.2 bits (45), Expect = 5.0
Identities = 9/40 (22%), Positives = 21/40 (52%)
Frame = -2
Query: 137 KQVIRKKIKLKRQINRRKKSNLKIKQKNNYTTSHYTN*HY 18
++ +++ + + + R K+ + NNY S+Y N +Y
Sbjct: 60 RKTSKERSRDRTERERSKEPKIISSLSNNYNYSNYNNNNY 99
>DQ325127-1|ABD14141.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 22.2 bits (45), Expect = 5.0
Identities = 9/40 (22%), Positives = 21/40 (52%)
Frame = -2
Query: 137 KQVIRKKIKLKRQINRRKKSNLKIKQKNNYTTSHYTN*HY 18
++ +++ + + + R K+ + NNY S+Y N +Y
Sbjct: 60 RKTSKERSRDRTERERSKEPKIISSLSNNYNYSNYNNNNY 99
>DQ325126-1|ABD14140.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 22.2 bits (45), Expect = 5.0
Identities = 9/40 (22%), Positives = 21/40 (52%)
Frame = -2
Query: 137 KQVIRKKIKLKRQINRRKKSNLKIKQKNNYTTSHYTN*HY 18
++ +++ + + + R K+ + NNY S+Y N +Y
Sbjct: 60 RKTSKERSRDRTERERSKEPKIISSLSNNYNYSNYNNNNY 99
>DQ325125-1|ABD14139.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 22.2 bits (45), Expect = 5.0
Identities = 9/40 (22%), Positives = 21/40 (52%)
Frame = -2
Query: 137 KQVIRKKIKLKRQINRRKKSNLKIKQKNNYTTSHYTN*HY 18
++ +++ + + + R K+ + NNY S+Y N +Y
Sbjct: 60 RKTSKERSRDRTERERSKEPKIISSLSNNYNYSNYNNNNY 99
>DQ325077-1|ABD14091.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.2 bits (45), Expect = 5.0
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
Frame = -2
Query: 125 RKKIKLKRQINRRKK-----SNLKIKQKNNYTTSHYTN 27
R + + +R+ +R K SN I NNY ++Y N
Sbjct: 66 RSRDRTERERSREPKIISSLSNKTIHNNNNYNNNNYNN 103
>AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex
determiner protein.
Length = 426
Score = 22.2 bits (45), Expect = 5.0
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
Frame = -2
Query: 125 RKKIKLKRQINRRKK-----SNLKIKQKNNYTTSHYTN 27
R + + +R+ +R K SN I NNY ++Y N
Sbjct: 299 RSRDRTERERSREPKIISSLSNKTIHNNNNYNNNNYNN 336
>DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 21.8 bits (44), Expect = 6.6
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +2
Query: 539 LSYFPIRSTFVVFGTRIFSSFALIFVNIS 625
LS FP RS + +RIF F N++
Sbjct: 405 LSKFPTRSKRIDVISRIFFPIVFAFFNLA 433
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 21.8 bits (44), Expect = 6.6
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +2
Query: 539 LSYFPIRSTFVVFGTRIFSSFALIFVNIS 625
LS FP RS + +RIF F N++
Sbjct: 405 LSKFPTRSKRIDVISRIFFPIVFAFFNLA 433
>DQ325090-1|ABD14104.1| 178|Apis mellifera complementary sex
determiner protein.
Length = 178
Score = 21.8 bits (44), Expect = 6.6
Identities = 8/37 (21%), Positives = 20/37 (54%)
Frame = -2
Query: 137 KQVIRKKIKLKRQINRRKKSNLKIKQKNNYTTSHYTN 27
++ +++ + +++ R K+ + NNY S+Y N
Sbjct: 60 RETSKERSRDRKERERSKEPKIISSLSNNYKYSNYNN 96
>AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex
determiner protein.
Length = 419
Score = 21.8 bits (44), Expect = 6.6
Identities = 8/37 (21%), Positives = 20/37 (54%)
Frame = -2
Query: 137 KQVIRKKIKLKRQINRRKKSNLKIKQKNNYTTSHYTN 27
++ +++ + +++ R K+ + NNY S+Y N
Sbjct: 293 RETSKERSRDRKERERSKEPKIISSLSNNYKYSNYNN 329
>AF004842-1|AAD01205.1| 598|Apis mellifera major royal jelly
protein MRJP5 protein.
Length = 598
Score = 21.4 bits (43), Expect = 8.8
Identities = 7/20 (35%), Positives = 13/20 (65%)
Frame = -1
Query: 585 RVPKTTKVERMGKYDRIQEL 526
R K ++++RM K DR+ +
Sbjct: 506 RTDKMSRIDRMDKIDRMDRM 525
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,963
Number of Sequences: 438
Number of extensions: 4161
Number of successful extensions: 48
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -