Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11k03
(844 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 437 e-124
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 431 e-122
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 191 9e-50
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 111 9e-26
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 28 1.4
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po... 27 3.3
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun... 26 7.7
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 437 bits (1077), Expect = e-124
Identities = 197/242 (81%), Positives = 218/242 (90%)
Frame = -2
Query: 843 SDAAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQT 664
SD FMVDNEA YDICRRNLDIERPTY NLNRLI Q+VSSITASLRF G+LNVDL EFQT
Sbjct: 202 SDCTFMVDNEACYDICRRNLDIERPTYENLNRLIAQVVSSITASLRFAGSLNVDLNEFQT 261
Query: 663 NLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCM 484
NLVPYPRIHFPLVTY+P++SA KA+HE SV EITN CFEP NQMVKCDPR G+YMA C+
Sbjct: 262 NLVPYPRIHFPLVTYSPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRTGRYMATCL 321
Query: 483 LYRGDVVPKDVNAAIGTIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCM 304
LYRGDV+P+DV AA+ +IK++RTIQFVDWCPTGFK+GI Y+PP VPG +AKV RAVCM
Sbjct: 322 LYRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQHVPGSGIAKVNRAVCM 381
Query: 303 LSNTTAIAEAWSRLNHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGM 124
LSNTT+IAEAWSRL+HKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALE+DYEEVG
Sbjct: 382 LSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVGQ 441
Query: 123 DS 118
DS
Sbjct: 442 DS 443
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 431 bits (1063), Expect = e-122
Identities = 194/242 (80%), Positives = 217/242 (89%)
Frame = -2
Query: 843 SDAAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQT 664
+D FMVDNE+ YDICRRNLDIERP+Y NLNRLI Q+VSSITASLRF+G+LNVDL EFQT
Sbjct: 198 ADCTFMVDNESCYDICRRNLDIERPSYENLNRLIAQVVSSITASLRFEGSLNVDLAEFQT 257
Query: 663 NLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCM 484
NLVPYPRIHFPLVTYAP++SA KA+HE SV EITN CFEP NQMVKCDPR G+YMA C+
Sbjct: 258 NLVPYPRIHFPLVTYAPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRAGRYMATCL 317
Query: 483 LYRGDVVPKDVNAAIGTIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCM 304
LYRGDV+P+DV AA+ TIK KRTIQFVDWCPTGFK+GI +PP + G ++AKV RAVCM
Sbjct: 318 LYRGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICDRPPQHIEGSEIAKVDRAVCM 377
Query: 303 LSNTTAIAEAWSRLNHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGM 124
LSNTT+IAEAWSRL+HKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALE+DYEEVG
Sbjct: 378 LSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVGQ 437
Query: 123 DS 118
DS
Sbjct: 438 DS 439
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 191 bits (466), Expect = 9e-50
Identities = 93/244 (38%), Positives = 144/244 (59%), Gaps = 3/244 (1%)
Frame = -2
Query: 843 SDAAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQT 664
SD F +DNEA+ I L I+ P+Y +LN L+ +++ +T S RF G LN DL +
Sbjct: 196 SDETFCIDNEALSSIFANTLKIKSPSYDDLNHLVSAVMAGVTTSFRFPGELNSDLRKLAV 255
Query: 663 NLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCM 484
N+VP+PR+HF +V +AP+ + + + +SV E+T F+ N MV DPRHG+Y+
Sbjct: 256 NMVPFPRLHFFMVGFAPLAAIGSSSFQAVSVPELTQQMFDANNMMVAADPRHGRYLTVAA 315
Query: 483 LYRGDVVPKDVNAAIGTIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCM 304
L+RG V K+V+ I +++TK + FV+W P + PP DL + +
Sbjct: 316 LFRGKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVPPK-----DL---KMSATF 367
Query: 303 LSNTTAIAEAWSRLNHKFDLMYAKRAFVHWYVGEGMEEGEFSEAR---EDLAALEKDYEE 133
+ N+T+I E + RL +F M+ ++AF+HWY GEGM+E EF+EA DL + + Y+E
Sbjct: 368 IGNSTSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQE 427
Query: 132 VGMD 121
G+D
Sbjct: 428 AGID 431
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 111 bits (268), Expect = 9e-26
Identities = 66/243 (27%), Positives = 124/243 (51%), Gaps = 7/243 (2%)
Frame = -2
Query: 843 SDAAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQT 664
+D+ ++DN A+ I L + PT+ N+L+ ++S+ T +LR+ G +N DL
Sbjct: 199 ADSVVVLDNAALAHIAADRLHTQNPTFHQQNQLVSTVMSASTTTLRYPGYMNNDLVSIIA 258
Query: 663 NLVPYPRIHFPLVTYAPVIS---AEKAYHEQLSVAEITNACFEPANQMVKCDP-RHGKYM 496
+L+P PR HF L +Y P + E + +V ++ P NQMV +P + ++
Sbjct: 259 SLIPSPRCHFLLTSYTPFTNQQVEEAKAIRKTTVLDVMRRLLLPKNQMVSVNPSKKSCFI 318
Query: 495 ACCMLYRGDVVPKDVNAAIGTIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQR 316
+ + +G+ P DV+ ++ I+ +R F+ W P +V ++ + P + ++ +
Sbjct: 319 SILDIIQGEADPADVHKSLLRIRERRYASFIPWGPASIQVALSKKSPYIKTNHRVSGL-- 376
Query: 315 AVCMLSNTTAIAEAWSRLNHKFDLMYAKRAFVHWYVGEGMEE---GEFSEAREDLAALEK 145
ML+N T+IA + R ++D + + AF+ Y E + E EF +R+ +A L
Sbjct: 377 ---MLANHTSIASLFKRTLDQYDRLRKRNAFLEQYKKEAIFEDDLNEFDSSRDVVADLIN 433
Query: 144 DYE 136
+YE
Sbjct: 434 EYE 436
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = -2
Query: 564 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAI 439
+ ACFEP N C H K C L + KD N ++
Sbjct: 361 LCGACFEPINAKCYCG-LHSKTYPCSSLPSPSISKKDENGSV 401
>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 793
Score = 27.1 bits (57), Expect = 3.3
Identities = 18/63 (28%), Positives = 26/63 (41%)
Frame = -2
Query: 504 KYMACCMLYRGDVVPKDVNAAIGTIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAK 325
++ + Y + KDVN +G TI +W PTG ++ Y V D
Sbjct: 142 RHSSFAQYYLYNTETKDVNM-LGQDNEHWTISLAEWSPTGHQLSFVYNNDLYVRKND-GN 199
Query: 324 VQR 316
VQR
Sbjct: 200 VQR 202
>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1165
Score = 25.8 bits (54), Expect = 7.7
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = +1
Query: 271 PRLCYGSSIGQHAHGALHLRQISTRYHSWWLIVYPHLESCRAPVYKLNGAFRFD-GANGG 447
PR Y ++G+ A GA+ Q+ +L+VYP + +L G + G N
Sbjct: 710 PRNTYQCAMGKQAIGAIAYNQLQRIDTLLYLMVYPQQPMVKTKTIELIGYDKLPAGQNAT 769
Query: 448 IYIL 459
+ I+
Sbjct: 770 VAIM 773
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,543,613
Number of Sequences: 5004
Number of extensions: 76443
Number of successful extensions: 232
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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