Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11j21
(830 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22A12.03c |csn4||COP9/signalosome complex subunit Csn4 |Schi... 53 4e-08
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p... 30 0.46
SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar... 28 1.9
SPAC607.05 |rpn9||19S proteasome regulatory subunit Rpn9|Schizos... 27 3.3
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz... 27 4.3
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom... 27 4.3
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc... 25 10.0
>SPAC22A12.03c |csn4||COP9/signalosome complex subunit Csn4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 377
Score = 53.2 bits (122), Expect = 4e-08
Identities = 49/215 (22%), Positives = 93/215 (43%), Gaps = 2/215 (0%)
Frame = -2
Query: 778 LKIARLYLEVDDPVQAEAFVNRASLLQAETTNEQLQIYYKVCYARVLDYRRKFIEAAQ-R 602
+++ YL++ +A V + L + +N+QL + ++C AR LD +F+EAA+
Sbjct: 139 IRLGDAYLKLGKAEKAILTVRTSIPLAFKVSNDQLLMELQLCNARALDETGQFLEAAKCY 198
Query: 601 YNELSYRNIIHEDERMTCLRNALICTVLASAGQQRSRMLATLFKDERCQQLPAYSILEKM 422
Y L Y+ +E L + C +LA + L + +++P YS++EK
Sbjct: 199 YRVLQYKVPGNELIYRENLCSVAQCLLLAIPSPIVLQFLQEISLQPSVREIPFYSLVEKY 258
Query: 421 YLDRIIRRSELQEFESLMQTHQKATTPDGSTILD-RAVFEHNLLSASKLYNNITFEELGA 245
+ I + + + HQ I D R E N+L S+ + + L
Sbjct: 259 LKRKFIGKEDGAFLLPFLLPHQ--VIHMNRLIEDGRHFLETNILFLSEFFEVSSTSILAK 316
Query: 244 LLETPPAKAERIASHMISEGRMNGYIDQISSIVHF 140
+ + + + + M+ + R+N IDQ + F
Sbjct: 317 HFKLSEEQVDTVVADMVIQERLNASIDQCEGYITF 351
>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 595
Score = 29.9 bits (64), Expect = 0.46
Identities = 43/173 (24%), Positives = 67/173 (38%), Gaps = 3/173 (1%)
Frame = -2
Query: 742 PVQAEAFVNRASLLQAETTNEQLQIYYKVCYARVLDYRRKFIEAAQRYNELSYRNIIHED 563
PV A+V + L +TT + Y YR+ +E + N+ I + +
Sbjct: 418 PVDLNAWVEDSLALNIDTTQFPSYLSYHETSVSHNTYRQNNLEELKNQNDYLTSQITNLE 477
Query: 562 ERMTCL--RNALICTVLASAGQQRSRM-LATLFKDERCQQLPAYSILEKMYLDRIIRRSE 392
E M L N + L++ RS M AT L A LEK + +
Sbjct: 478 EGMVMLNKENTKLSEALSNHRVTRSEMEEATEILKNNSADLKAQ--LEKQ--PQELENRL 533
Query: 391 LQEFESLMQTHQKATTPDGSTILDRAVFEHNLLSASKLYNNITFEELGALLET 233
LQE L Q +QK + ++I + L K N++ +E A L+T
Sbjct: 534 LQEISILKQRNQKFLKNNATSIQQIQYLDEELGKTLKQLNDL--KEKHAQLQT 584
>SPAC1B3.08 |||COP9 signalosome complex subunit 12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 423
Score = 27.9 bits (59), Expect = 1.9
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -2
Query: 238 ETPPAKAERIASHMISEGRMNGYIDQISSIVHFETREILPQ 116
+ P E I ++MIS+G M GYI + V ++ P+
Sbjct: 379 DLPKLHVEAILANMISKGYMRGYISRNFETVVLSAKDPFPK 419
>SPAC607.05 |rpn9||19S proteasome regulatory subunit
Rpn9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 381
Score = 27.1 bits (57), Expect = 3.3
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = -2
Query: 268 ITFEELGALLETPPAKAERIASHMISEGRMNGYIDQISSIV 146
+TF+ + P + E + +S G + G ID+++ IV
Sbjct: 296 LTFDTIARATRIPSNEVELLIMRALSVGLITGVIDEVTQIV 336
>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 26.6 bits (56), Expect = 4.3
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -3
Query: 393 NCRSSNPSCRHIKRRPHPTGLRSSTERFSN 304
NCR+ P +I RP+ T RSS + SN
Sbjct: 217 NCRNLVPDNFNISIRPNTTNYRSSIQENSN 246
Score = 26.6 bits (56), Expect = 4.3
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2
Query: 634 YRRKFIEAAQRYNELSYRNIIHEDERMTCLRN 539
+RR +E QR + LS++N+I +E L N
Sbjct: 426 HRRLLLEELQRLSGLSHKNLIRYNESFWYLNN 457
>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 659
Score = 26.6 bits (56), Expect = 4.3
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 160 ISSIVHFETREILPQWDKQIQSLCYQVNSLIEKIASA 50
+SS+ E LP K++ LC NSL+E++ A
Sbjct: 431 VSSLREKSLLEELPDLGKKVDDLCSFTNSLMEQVRLA 467
>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1106
Score = 25.4 bits (53), Expect = 10.0
Identities = 25/115 (21%), Positives = 47/115 (40%), Gaps = 7/115 (6%)
Frame = -2
Query: 475 FKDERCQ---QLPAYSILEKMYLDRIIRRSELQEFESLMQTHQKATTP--DGSTILDRAV 311
FK+ C ++P + + RII+R+ EFE++ + H + P S L +
Sbjct: 958 FKENMCVHDGKVPTFYADYVNEVKRIIQRNANLEFEAIWKGHSENKIPYTSLSNHLSTEI 1017
Query: 310 --FEHNLLSASKLYNNITFEELGALLETPPAKAERIASHMISEGRMNGYIDQISS 152
+H++ + KL+ ++ F P +I + E Y+ I S
Sbjct: 1018 VKLDHDIYNYEKLWADVGFRNAVLRASIPKTLQAKIGLEKMLERIPESYLRAIFS 1072
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,505,428
Number of Sequences: 5004
Number of extensions: 73734
Number of successful extensions: 210
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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