Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11j20
         (775 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    22   5.5  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   5.5  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          22   7.3  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   7.3  
DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              21   9.6  
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              21   9.6  

>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/34 (26%), Positives = 15/34 (44%)
 Frame = +2

Query: 227 PFNIYNLMKLFTKNTNISLHVNVQFAVMECFCSH 328
           PF      K FT++ ++  H+ +        CSH
Sbjct: 9   PFECPECHKRFTRDHHLKTHMRLHTGEKPYHCSH 42


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +3

Query: 402 NHNHLREYLPVLK 440
           N +++R YLPVLK
Sbjct: 442 NGDYIRRYLPVLK 454


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 153 PRSTLHNHTKLLHIGWLFNSLNHP 224
           P ++L    KLL +GW  + L HP
Sbjct: 127 PHTSLVTRQKLLELGW--DVLPHP 148


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 153 PRSTLHNHTKLLHIGWLFNSLNHP 224
           P ++L    KLL +GW  + L HP
Sbjct: 249 PHTSLVTRQKLLELGW--DVLPHP 270


>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = -2

Query: 768 KSRTNVNEMFAEIVREMNVSPEKEKP 691
           K+ + +++   + + E+N   E EKP
Sbjct: 34  KTESGIDQQTVDDINEVNFDVEDEKP 59


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = -2

Query: 768 KSRTNVNEMFAEIVREMNVSPEKEKP 691
           K+ + +++   + + E+N   E EKP
Sbjct: 34  KAESGIDQQTVDDINEVNFDVEDEKP 59


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,328
Number of Sequences: 438
Number of extensions: 4159
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)