Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11j19
         (558 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha...    25   5.7  
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo...    25   5.7  
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   5.7  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   5.7  
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po...    25   7.5  
SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein Pvg5|Schizos...    25   7.5  

>SPAC4F8.11 |||WD repeat protein, human WDR24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 846

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = +2

Query: 305 VEQGAGKGNTLLQDTRSKPSSRYTMQHRALSCTDNMHHMAFQSKHR 442
           +++G    N    D+R+  +S Y +   A + +   H+  F S HR
Sbjct: 581 LKKGQAPVNNFSTDSRASINSSYLLDSAASNYSGTSHNEMFNSFHR 626


>SPBC4.03c |||COPII-coated vesicle component Sfb3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -1

Query: 330 FPLPAPCSTVSRALSADTSITKPTSVPSM*KTGY 229
           +P P+  S +  + S DT++  P ++PS  +  Y
Sbjct: 93  YPTPSTPSVLPESFSNDTNLLDPAALPSAPEVRY 126


>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +2

Query: 344 DTRSKPSSRYTMQHRALSCTDNMHHMAFQSKHRDRSCRKE 463
           DT S  SS     H ALS  D  +  A  +     SCR++
Sbjct: 235 DTSSSLSSSSHPSHEALSTIDTKNLQALAASAAPSSCRQQ 274


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -1

Query: 357 LLRVSWRRVFPLPAP 313
           L RV W+RV PLP P
Sbjct: 855 LKRVHWQRVDPLPGP 869


>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 449

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 18  IAYKIPSKQKSPNRHARSATTLTDRYS 98
           ++ +IPSK+KS N      +T+  RYS
Sbjct: 58  VSVEIPSKEKSYNAFLHWMSTVPKRYS 84


>SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein
           Pvg5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 322 ARPLFDRVQSLVCRYQYYQTYLRALHV 242
           A+ LFD V S V +Y Y+ T +  +H+
Sbjct: 290 AKLLFDYVVSQVVKYPYFVTDIYQIHL 316


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,152,576
Number of Sequences: 5004
Number of extensions: 40601
Number of successful extensions: 148
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)