Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11j18
         (818 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.08c |||COPII-coated vesicle component Erv46|Schizosacc...    28   1.4  
SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual     28   1.8  
SPBC1105.18c ||SPBC887.21c|peptide release factor|Schizosaccharo...    27   3.2  
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    27   3.2  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   5.6  
SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma...    26   7.4  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   9.8  

>SPAC24B11.08c |||COPII-coated vesicle component
           Erv46|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +2

Query: 344 ELLDILDMYSLCILNSGSPTRLTKPGEVISAIDLSICTPQLAS 472
           ++LD+   +   I ++ S TRL+  GE+IS  DL I   Q  S
Sbjct: 87  DVLDVSGEFQRDIHHTVSKTRLSPSGEIISVDDLDIGNQQSIS 129


>SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 435

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 17/65 (26%), Positives = 28/65 (43%)
 Frame = -2

Query: 253 NEVFNFIEDLQGGMRDIDRDKTDTINNSCNDRKAVTM*REREGRKGARVSDE*AYTTISI 74
           N+V NF++      R+  R     +     D KA+T+   R+  +    + +     I I
Sbjct: 285 NKVANFVKAFNQDGREFIRSSVQKLLGFSKDEKAITVFPPRKRARKLEENKDPVRQDIPI 344

Query: 73  SPVFS 59
            PVFS
Sbjct: 345 PPVFS 349


>SPBC1105.18c ||SPBC887.21c|peptide release
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 162

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 17/51 (33%), Positives = 20/51 (39%)
 Frame = +2

Query: 242 KNFISVLPRPFMILGDFNSHHTSWGSSVSNSYGYELLDILDMYSLCILNSG 394
           K FISV    F  L + N  HT + S     Y  E L   D+    I   G
Sbjct: 11  KTFISVRLNAFSCLAELNFRHTWYCSKKETPYQLERLQEEDIEETFICGKG 61


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1142

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 104  RNSSTFSSFPLPSHSNCFSVIAAIV 178
            RN S   S P P+H N FS+I  I+
Sbjct: 1027 RNLSMHWSIPFPTHHNFFSIIPFIL 1051


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1877

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 278 ILGDFNSHHTSWGSSVSNSYGYELLDILDMY 370
           +L  FN H  SW  + S +  Y++ ++L+ Y
Sbjct: 876 VLFQFNRHARSWIQNSSKAIPYQVKNLLESY 906


>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 535

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 6/84 (7%)
 Frame = +2

Query: 89  VCLLIRNSSTFSSFPLPSHSNC------FSVIAAIVDGICFVSIYVPHPSLQIFNEIKNF 250
           +C L    + F S P+ SH +       F+ +AAI+  +  + +Y P+   ++   I  F
Sbjct: 59  ICHLFLLLNIFISIPIISHLSPGFMPVGFTALAAILLAMQIMFVYSPNAPERVTQRIICF 118

Query: 251 ISVLPRPFMILGDFNSHHTSWGSS 322
           +  +    + L     H   W S+
Sbjct: 119 LLAIDVLVVFLSPILRHREGWRSN 142


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 36/141 (25%), Positives = 64/141 (45%), Gaps = 4/141 (2%)
 Frame = +2

Query: 101  IRNSSTFSSFPLPSHSNCFSVIAAIVDGICFVSIYVPHPSLQIFNEIKNF-ISVLPRPFM 277
            I +SST  S P PS S+     ++I+ G   + +     ++ I + +  +  SV+P    
Sbjct: 618  ISSSSTILSSPTPSTSSLMISSSSIISGSSSI-LSSSISTIPISSSLSTYSSSVIPSSST 676

Query: 278  ILGDFNSHHTSWG--SSVSNSYGYELLDILDMYSLCILN-SGSPTRLTKPGEVISAIDLS 448
            ++   +S   S    +S S+S       ++  YS  + N + S   LT      SAI  S
Sbjct: 677  LVSSSSSLIVSSSPVASSSSSPIPSSSSLVSTYSASLSNITHSSLSLTAMSS-SSAIPTS 735

Query: 449  ICTPQLASSLSWSTLCSTYNS 511
            + +  L ++ S +TL S+  S
Sbjct: 736  VNSSTLITASSSNTLLSSITS 756


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,260,762
Number of Sequences: 5004
Number of extensions: 66233
Number of successful extensions: 184
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)