Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11j17
(790 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo... 42 1e-04
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ... 42 1e-04
SPAC890.04c |||ribosome biogenesis protein Ytm1 |Schizosaccharom... 42 1e-04
SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces p... 40 4e-04
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom... 38 0.001
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc... 38 0.002
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 38 0.002
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 38 0.002
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1... 36 0.007
SPBC713.05 |||WD repeat protein, human MAPK organizer 1 |Schizos... 33 0.035
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb... 33 0.062
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 31 0.14
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi... 31 0.19
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc... 31 0.19
SPAC23H3.08c |bub3||mitotic spindle checkpoint protein Bub3|Schi... 31 0.25
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 30 0.43
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13... 30 0.43
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 30 0.43
SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyce... 30 0.43
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 29 0.57
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 29 0.57
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|... 29 0.76
SPCC126.01c ||SPCC576.18c|conserved fungal protein|Schizosacchar... 29 0.76
SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||... 29 1.0
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid... 29 1.0
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 28 1.3
SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git... 28 1.3
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom... 28 1.8
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb... 28 1.8
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c... 28 1.8
SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyc... 27 3.1
SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar... 27 4.0
SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit Swd2|Schizosa... 27 4.0
SPAC4D7.05 |sum1|tif34|translation initiation factor eIF3i|Schiz... 26 5.4
SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy... 26 5.4
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 26 5.4
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe... 26 5.4
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc... 26 7.1
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc... 25 9.4
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch... 25 9.4
SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces pombe... 25 9.4
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe... 25 9.4
>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 651
Score = 41.9 bits (94), Expect = 1e-04
Identities = 35/152 (23%), Positives = 68/152 (44%), Gaps = 9/152 (5%)
Frame = -1
Query: 790 PALSLGLTADQTKMAVGYGDSSIKVYDMETQETEQTYKVHKLRLQFIPKKLQRMHFGQVC 611
P +L L++D + G D +++ +D+ T QT L F+ + Q+
Sbjct: 437 PVTALALSSDDV-LITGADDKTVRQWDIVTGRCIQT-------LDFVWAETHDTSTSQIL 488
Query: 610 ALRCHKDRPYM---------FASAAWDKTLRIWDIRCQVGCVMTFEGVDVCSDSIDLNRD 458
+K P++ AS D +RIWD+R + V +F G S+ + +
Sbjct: 489 VSDTYKQEPFIRALDCLDAAVASGTVDGLIRIWDLRIGLP-VRSFIGHTAPISSLQFDSN 547
Query: 457 HCIAGSWQATEALTVWDLVARKRMNVIRVQNR 362
H +GS+ ++ +WDL + +N+I ++ +
Sbjct: 548 HLYSGSYD--NSVRIWDLRSGSPINIIPMEKK 577
>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 314
Score = 41.9 bits (94), Expect = 1e-04
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Frame = -1
Query: 628 HFGQVCALRCHKDRPYMFASAAWDKTLRIWDIRCQVGCVMTFEG--VDVCSDSIDLNRDH 455
HF CAL D Y SA+WDKT+R+WD+ + C F G DV S SI +
Sbjct: 64 HFVSDCALSF--DSHYAL-SASWDKTIRLWDLE-KGECTHQFVGHTSDVLSVSISPDNRQ 119
Query: 454 CIAGSWQATEALTVWDLVARKRMNV 380
++GS T + +W+++ + +
Sbjct: 120 VVSGSRDKT--IKIWNIIGNCKYTI 142
Score = 30.7 bits (66), Expect = 0.25
Identities = 15/58 (25%), Positives = 26/58 (44%)
Frame = -1
Query: 577 FASAAWDKTLRIWDIRCQVGCVMTFEGVDVCSDSIDLNRDHCIAGSWQATEALTVWDL 404
F SA WDK +++WD+ + G ++ ++ D + S L +WDL
Sbjct: 165 FVSAGWDKAVKVWDLE-TFSLRTSHYGHTGYVSAVTISPDGSLCASGGRDGTLMLWDL 221
Score = 26.6 bits (56), Expect = 4.0
Identities = 19/66 (28%), Positives = 34/66 (51%)
Frame = -1
Query: 730 SSIKVYDMETQETEQTYKVHKLRLQFIPKKLQRMHFGQVCALRCHKDRPYMFASAAWDKT 551
SSI+++D+ETQE KV +L + F+ ++ + +L D +F S D
Sbjct: 254 SSIRIFDLETQE-----KVDELTVDFVGVG-KKSSEPECISLTWSPDGQTLF-SGWTDNL 306
Query: 550 LRIWDI 533
+R+W +
Sbjct: 307 IRVWQV 312
Score = 26.2 bits (55), Expect = 5.4
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Frame = -1
Query: 628 HFGQVCALRCHKDRPYMFASAAWDKTLRIWD-IRCQV--GCV---MTFEGVDVCSDSIDL 467
H G V +L + P + S + DK++ +W+ +R V G +T V ++
Sbjct: 14 HSGWVTSLSTAPENPDILLSGSRDKSIILWNLVRDDVNYGVAQRRLTGHSHFVSDCALSF 73
Query: 466 NRDHCIAGSWQATEALTVWDL 404
+ + ++ SW T + +WDL
Sbjct: 74 DSHYALSASWDKT--IRLWDL 92
>SPAC890.04c |||ribosome biogenesis protein Ytm1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 440
Score = 41.5 bits (93), Expect = 1e-04
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = -1
Query: 628 HFGQVCALRCHKDRPYMFASAAWDKTLRIWDIRCQVGCVMT 506
H V L + PYMFAS + D T R+WD+R G + T
Sbjct: 354 HKNLVSGLSASPENPYMFASVSHDNTCRVWDVRATSGSIYT 394
>SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 352
Score = 39.9 bits (89), Expect = 4e-04
Identities = 26/87 (29%), Positives = 45/87 (51%)
Frame = -1
Query: 790 PALSLGLTADQTKMAVGYGDSSIKVYDMETQETEQTYKVHKLRLQFIPKKLQRMHFGQVC 611
P LS+ + D TK+A G D S KV+D++T + +Q H ++ + + ++ M +
Sbjct: 76 PVLSVNWSRDGTKVASGSVDKSAKVFDIQTGQNQQV-AAHDDAVRCV-RFVEAMGTSPI- 132
Query: 610 ALRCHKDRPYMFASAAWDKTLRIWDIR 530
A+ +WDKTL+ WD+R
Sbjct: 133 -----------LATGSWDKTLKYWDLR 148
>SPBC713.04c |||U3 snoRNP-associated protein
Utp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 854
Score = 38.3 bits (85), Expect = 0.001
Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 5/100 (5%)
Frame = -1
Query: 628 HFGQVCALRCHKDRPYMFASAAWDKTLRIWDIRCQVGCVMTFEGVDVCSDSIDL-----N 464
H G V +L + + AS +WDKT+RIWDI + G V E + + SD + L
Sbjct: 466 HEGPVSSLSFNSSGS-LLASGSWDKTVRIWDIFSRSGIV---EPLPIPSDVLSLAFHPDG 521
Query: 463 RDHCIAGSWQATEALTVWDLVARKRMNVIRVQNRRQDVDG 344
++ C+A LT W++ K+ ++I + R+D+ G
Sbjct: 522 KEVCVA---SLDGQLTFWNVQEGKQTSLI---DGRKDLSG 555
>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 430
Score = 37.9 bits (84), Expect = 0.002
Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
Frame = -1
Query: 685 TYKVHKLRL---QFIPKKLQRMHFGQVCALRCHKDRPYMFASAAWDKTLRIWDIRCQVGC 515
T ++H RL + PK +Q H + A+ + Y+ A+A+ DKT+ +WD+R
Sbjct: 259 TLQIHDTRLNPEEEAPKVIQA-HSKAINAVAINPFNDYLLATASADKTVALWDLRNPYQR 317
Query: 514 VMTFEGVDVCSDSIDLN-RDHCIAGSWQATEALTVWDL 404
+ T EG + ++ + D I S + +WDL
Sbjct: 318 LHTLEGHEDEVYGLEWSPHDEPILASSSTDRRVCIWDL 355
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 37.9 bits (84), Expect = 0.002
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Frame = -1
Query: 628 HFGQVCALRCHKDRPYMFASAAWDKTLRIWDI--RCQVGCVMTFEGVDVCSDSIDLN--R 461
H+ + ++ Y+ ASA+ DKT+RIWD RC V C+ +G SID N
Sbjct: 95 HYRGISQVKWATGSKYL-ASASDDKTIRIWDFEKRCSVRCL---KGHTNYVSSIDFNPLG 150
Query: 460 DHCIAGSWQATEALTVWDL 404
++GSW E + +W+L
Sbjct: 151 TLLVSGSWD--ETVRIWNL 167
Score = 28.3 bits (60), Expect = 1.3
Identities = 12/61 (19%), Positives = 29/61 (47%)
Frame = -1
Query: 580 MFASAAWDKTLRIWDIRCQVGCVMTFEGVDVCSDSIDLNRDHCIAGSWQATEALTVWDLV 401
+ S +WD+T+RIW+++ C+ S+ ++ D + + +WD++
Sbjct: 152 LLVSGSWDETVRIWNLQ-DGTCLRMLPAHSEPIISVSISADGTLCATASYDGMARIWDVL 210
Query: 400 A 398
+
Sbjct: 211 S 211
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 37.5 bits (83), Expect = 0.002
Identities = 31/122 (25%), Positives = 56/122 (45%)
Frame = -1
Query: 742 GYGDSSIKVYDMETQETEQTYKVHKLRLQFIPKKLQRMHFGQVCALRCHKDRPYMFASAA 563
G DSSI+++ + T E + H LR+ + + +R +C S +
Sbjct: 523 GSYDSSIRIWRVSTGECLYHLRGHSLRIYSVLYEPER----NICI------------SGS 566
Query: 562 WDKTLRIWDIRCQVGCVMTFEGVDVCSDSIDLNRDHCIAGSWQATEALTVWDLVARKRMN 383
DK++R+WD+ C EG D +++ ++ I+GS A + +WDL K +
Sbjct: 567 MDKSIRVWDLSTGT-CKYVLEGHDAFVTLLNVFQNRLISGS--ADSTIRIWDLNTGKPLM 623
Query: 382 VI 377
V+
Sbjct: 624 VL 625
Score = 26.2 bits (55), Expect = 5.4
Identities = 17/63 (26%), Positives = 31/63 (49%)
Frame = -1
Query: 685 TYKVHKLRLQFIPKKLQRMHFGQVCALRCHKDRPYMFASAAWDKTLRIWDIRCQVGCVMT 506
T ++H + +L+ H V A++ H++ S + DKT+R+W+I + C
Sbjct: 372 TIQIHNAITGVLEARLEG-HKEGVWAVKIHENT---LVSGSIDKTVRVWNIE-KAKCTHI 426
Query: 505 FEG 497
F G
Sbjct: 427 FRG 429
>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
Prw1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 431
Score = 35.9 bits (79), Expect = 0.007
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Frame = -1
Query: 649 PKKLQRMHFGQVCALRCHKDRPYMFASAAWDKTLRIWDIRCQVGCVMTFEGVDVCSDSID 470
P + H G + ++ + ++ A+ + DKT+ +WD+R + T EG + I
Sbjct: 273 PARSVHAHSGPIHSVAFNPHNDFILATCSTDKTIALWDLRNLNQRLHTLEGHEDIVTKIS 332
Query: 469 LN-RDHCIAGSWQATEALTVWDL 404
+ + I S A VWDL
Sbjct: 333 FSPHEEPILASTSADRRTLVWDL 355
>SPBC713.05 |||WD repeat protein, human MAPK organizer 1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 33.5 bits (73), Expect = 0.035
Identities = 32/120 (26%), Positives = 50/120 (41%), Gaps = 1/120 (0%)
Frame = -1
Query: 784 LSLGLTADQTKMAVGYGDSSIKVYDMETQETEQTYKVHKLRLQFIPKKLQRMHFGQVCAL 605
L L L D TK A GD I+V+D+ T + ++ RL H Q+ +
Sbjct: 60 LDLDLVYDSTKFASCGGDKFIQVWDVNTGKVDR-------RL--------GGHLAQINTI 104
Query: 604 RCHKDRPYMFASAAWDKTLRIWDIRC-QVGCVMTFEGVDVCSDSIDLNRDHCIAGSWQAT 428
R ++D + AS ++D +R+WD R + SID+ + GS T
Sbjct: 105 RYNEDSS-ILASGSFDSKVRLWDCRSNSFSPIQVLADAKDSVSSIDIAEHLIVTGSTDGT 163
Score = 26.2 bits (55), Expect = 5.4
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = -1
Query: 577 FASAAWDKTLRIWDIRCQVGCVMTFEGVDVCS-DSIDLNRDHCIAGSWQATEALTVWD 407
FAS DK +++WD+ G V G + ++I N D I S + +WD
Sbjct: 71 FASCGGDKFIQVWDV--NTGKVDRRLGGHLAQINTIRYNEDSSILASGSFDSKVRLWD 126
>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 494
Score = 32.7 bits (71), Expect = 0.062
Identities = 17/74 (22%), Positives = 35/74 (47%)
Frame = -1
Query: 571 SAAWDKTLRIWDIRCQVGCVMTFEGVDVCSDSIDLNRDHCIAGSWQATEALTVWDLVARK 392
S +D T+R+WD R VM+F + + + + + ++ VWDLVA +
Sbjct: 182 SGGYDGTIRLWDTRIADPEVMSFSHGEAIDVVLPMQSGSTVISA--GGPSIKVWDLVAGR 239
Query: 391 RMNVIRVQNRRQDV 350
+ ++ N ++ +
Sbjct: 240 QTPTKKLSNHQKSI 253
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 31.5 bits (68), Expect = 0.14
Identities = 20/92 (21%), Positives = 40/92 (43%)
Frame = -1
Query: 649 PKKLQRMHFGQVCALRCHKDRPYMFASAAWDKTLRIWDIRCQVGCVMTFEGVDVCSDSID 470
P ++ H V + H + Y+ ++ DKT R+WD+ + V F G ++
Sbjct: 455 PLRVFAGHLSDVDCVTFHPNSAYVLTGSS-DKTCRLWDVH-RGHSVRVFNGHTQPVTAVA 512
Query: 469 LNRDHCIAGSWQATEALTVWDLVARKRMNVIR 374
+ D S + + +WD+ +R+ +R
Sbjct: 513 IAPDGHTMASADSEGLIHLWDIGTGRRIKTMR 544
>SPBC15D4.14 |taf73||TATA-binding protein associated factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 31.1 bits (67), Expect = 0.19
Identities = 25/104 (24%), Positives = 44/104 (42%)
Frame = -1
Query: 715 YDMETQETEQTYKVHKLRLQFIPKKLQRMHFGQVCALRCHKDRPYMFASAAWDKTLRIWD 536
Y T +QT ++ + P ++ H V + H + Y+ A+ + D T R+WD
Sbjct: 458 YYFATASHDQTARLWDVE-HAAPLRVFVGHQNDVDCVSFHPNAAYL-ATGSSDHTTRMWD 515
Query: 535 IRCQVGCVMTFEGVDVCSDSIDLNRDHCIAGSWQATEALTVWDL 404
+R G V F ++ ++ D S + + VWDL
Sbjct: 516 VRTG-GTVRVFNAHHSPVSALCMSADGLSLASADESGIIKVWDL 558
>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 490
Score = 31.1 bits (67), Expect = 0.19
Identities = 21/84 (25%), Positives = 38/84 (45%)
Frame = -1
Query: 781 SLGLTADQTKMAVGYGDSSIKVYDMETQETEQTYKVHKLRLQFIPKKLQRMHFGQVCALR 602
S+ + D + +A GD + KV+D+ TQ+ + +L + + H V +
Sbjct: 185 SVNFSKDDSLLATSSGDQTSKVFDLSTQQC-----ITRLG----RRGVDGYHSHSVKQVN 235
Query: 601 CHKDRPYMFASAAWDKTLRIWDIR 530
D PY S + D ++ WD+R
Sbjct: 236 FCNDSPYNLVSCSRDGSIIFWDMR 259
>SPAC23H3.08c |bub3||mitotic spindle checkpoint protein
Bub3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 320
Score = 30.7 bits (66), Expect = 0.25
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -1
Query: 577 FASAAWDKTLRIWDIR 530
F S +WDK+ R+WD+R
Sbjct: 110 FISGSWDKSFRVWDVR 125
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 29.9 bits (64), Expect = 0.43
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Frame = -1
Query: 634 RMHFGQVCALRCHKDRPYMFASAAWDKTLRIWDIRCQVGCVMTFEG--VDVCSDSIDLNR 461
R H V + C D + SA++D TLR+W V C+ G V S +I+ +R
Sbjct: 574 RGHTDSVREVACLGD---LIVSASYDGTLRVWKASTGV-CLHVLRGHVGRVYSVTINPSR 629
Query: 460 DHCIAGSWQATEALTVWDL 404
CI+ A + +W+L
Sbjct: 630 QQCISAGTDA--KIRIWNL 646
>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 777
Score = 29.9 bits (64), Expect = 0.43
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = -1
Query: 574 ASAAWDKTLRIWDIRCQVGCVMTFEG 497
AS + D+T+RIW++ Q CV T EG
Sbjct: 523 ASGSGDRTIRIWNVDTQ-QCVQTLEG 547
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -1
Query: 634 RMHFGQVCALRCHKDRPYMFASAAWDKTLRIWD 536
+ H V A++ KD + ASA+ DKT+++WD
Sbjct: 462 KAHDRDVNAIQVSKDGR-IIASASQDKTIKLWD 493
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 29.9 bits (64), Expect = 0.43
Identities = 16/71 (22%), Positives = 34/71 (47%)
Frame = -1
Query: 586 PYMFASAAWDKTLRIWDIRCQVGCVMTFEGVDVCSDSIDLNRDHCIAGSWQATEALTVWD 407
PY+ AS + D T+RIW+++ + + T G + + I S + + +WD
Sbjct: 239 PYLLASGSKDNTVRIWNVKLRT-LLFTLSGHTAPITCVRWGGQNWIYSS-SYDKTIRIWD 296
Query: 406 LVARKRMNVIR 374
K +++++
Sbjct: 297 AKDGKCLHILK 307
Score = 25.4 bits (53), Expect = 9.4
Identities = 14/57 (24%), Positives = 28/57 (49%)
Frame = -1
Query: 580 MFASAAWDKTLRIWDIRCQVGCVMTFEGVDVCSDSIDLNRDHCIAGSWQATEALTVW 410
+ S++ D TL++WD+R + G + ++D + D S A +A+ +W
Sbjct: 445 LLVSSSQDTTLKVWDVRSK-KMKFDLPGHEDQVFAVDWSPDGQRVASGGADKAVRIW 500
>SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 473
Score = 29.9 bits (64), Expect = 0.43
Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 2/88 (2%)
Frame = -1
Query: 649 PKKLQRMHFGQVCALRCHKDRP--YMFASAAWDKTLRIWDIRCQVGCVMTFEGVDVCSDS 476
P L R+ G + +RC P F + A D+T++IWD+ V +T G
Sbjct: 152 PWTLMRVISGHLGWVRCVDVEPGNQWFCTGAGDRTIKIWDLASGV-LKLTLTGHIATVRG 210
Query: 475 IDLNRDHCIAGSWQATEALTVWDLVARK 392
+ ++ H S + + WDL K
Sbjct: 211 LAVSPRHPYLFSCGEDKMVKCWDLETNK 238
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 29.5 bits (63), Expect = 0.57
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -1
Query: 634 RMHFGQVCALRCHKDRPYMFASAAWDKTLRIWDIRCQVGCVMTF 503
R HF V H + + SA+ DKT+R+WD+ + V TF
Sbjct: 253 RGHFNNVSCCLFHPHQE-LILSASEDKTIRVWDLNRRT-AVQTF 294
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 29.5 bits (63), Expect = 0.57
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Frame = -1
Query: 616 VCALRCHKD-RPYMFASAAWDKTLRIWDIRCQ-VGCVMTFEGVDVCSDSIDLNRDHCIAG 443
VC L + + R S A DKTLR+W + + C+ T E ++ + + +N + + G
Sbjct: 57 VCELATNSEYRSPFILSGASDKTLRLWQLEEEYFTCIKTIE-LEATVNCLCVNENLVVCG 115
Query: 442 SWQATEALTVWDLVARKRMNVIR 374
++ + W+ R + R
Sbjct: 116 CSNSSCIVYSWNAEQRNLTEISR 138
>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 612
Score = 29.1 bits (62), Expect = 0.76
Identities = 8/27 (29%), Positives = 19/27 (70%)
Frame = -1
Query: 778 LGLTADQTKMAVGYGDSSIKVYDMETQ 698
L ++ +++A+ Y D +++ YD++TQ
Sbjct: 439 LSMSVTDSRIAIAYNDGNVRFYDLDTQ 465
>SPCC126.01c ||SPCC576.18c|conserved fungal
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 369
Score = 29.1 bits (62), Expect = 0.76
Identities = 22/69 (31%), Positives = 35/69 (50%)
Frame = -1
Query: 613 CALRCHKDRPYMFASAAWDKTLRIWDIRCQVGCVMTFEGVDVCSDSIDLNRDHCIAGSWQ 434
C L +D ++ ++A DKT+R W + + E DVC+D + L D IA + +
Sbjct: 227 CLLFDPQDSEALWTASA-DKTVREWSLYQGIHEETRMEHPDVCTDVLTL-ADGNIATACR 284
Query: 433 ATEALTVWD 407
E + VWD
Sbjct: 285 -DEEIRVWD 292
>SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 28.7 bits (61), Expect = 1.0
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -1
Query: 628 HFGQVCALRCHKDRPYMFASAAWDKTLRIWDIR 530
H G V A+ ++ AS + D T R+WDIR
Sbjct: 188 HTGNVLAVDWCPKNEFVLASGSADGTCRLWDIR 220
>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
peptidyl-prolyl cis-trans isomerase
Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 610
Score = 28.7 bits (61), Expect = 1.0
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = -1
Query: 784 LSLGLTADQTKMAVGYGDSSIKVYDMETQETEQTYKVHKLRLQFIPKKL 638
LS L+ D+ G D S+KV+D+E+ + V+ + L+F+PK +
Sbjct: 94 LSAELSQDERLFITGADDKSLKVFDVESIDL-----VNIIDLEFLPKAI 137
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 28.3 bits (60), Expect = 1.3
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -1
Query: 586 PYMFASAAWDKTLRIW 539
PY FASA D T+RIW
Sbjct: 483 PYQFASAGDDNTVRIW 498
>SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit
Git5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 305
Score = 28.3 bits (60), Expect = 1.3
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = -1
Query: 628 HFGQVCALRCHKDRPYMFASAAWDKTLRIWDIRCQVGCVMTFEG 497
H + +L P +F + DK ++WD+R C TF G
Sbjct: 146 HEMDIVSLDFLPSNPNLFVTGGCDKLAKLWDLRAAY-CCATFPG 188
>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 558
Score = 27.9 bits (59), Expect = 1.8
Identities = 20/94 (21%), Positives = 39/94 (41%), Gaps = 3/94 (3%)
Frame = -1
Query: 655 FIPKK---LQRMHFGQVCALRCHKDRPYMFASAAWDKTLRIWDIRCQVGCVMTFEGVDVC 485
+IPKK + H + LR ++ S + D ++IW++ + TF+G
Sbjct: 253 YIPKKHIFTWKGHTKGISCLRFFPISGHLLLSGSMDNQIKIWEVYHDRSLLRTFQGHARP 312
Query: 484 SDSIDLNRDHCIAGSWQATEALTVWDLVARKRMN 383
+ ++D S + + +WD K +N
Sbjct: 313 IRDLSFSQDGRSFLSTSFDKTIKLWDTELGKCLN 346
>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 605
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -1
Query: 790 PALSLGLTADQTKMAVGYGDSSIKVYDMETQETEQTYKVH 671
P S+ + D+ + G DS+IK++ +ET T+ H
Sbjct: 394 PVNSVRIIRDRGLVLSGSDDSTIKIWSLETNTCLHTFSAH 433
Score = 25.8 bits (54), Expect = 7.1
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = -1
Query: 571 SAAWDKTLRIWDIRCQVGCVMTFEGVDVCSDSI-DLNRDHCIAGSWQATEALTVWDLVAR 395
S + DKT+RIW+ R C+ G +DS+ L D + S A + +W
Sbjct: 328 SGSMDKTIRIWNYRTS-ECISILHG---HTDSVLCLTFDSTLLVSGSADCTVKLWHFSGG 383
Query: 394 KRMNV 380
KR+ +
Sbjct: 384 KRITL 388
>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
3|||Manual
Length = 625
Score = 27.9 bits (59), Expect = 1.8
Identities = 19/81 (23%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Frame = -1
Query: 349 DGEYIYACRYWNSSEYNRKGKYAIVGGSGTNCLEVI-NLHNRYISCSYPASGTVLAVASH 173
DGE + YWN+ ++ + ++ GS + +++I ++HNR + + A +A+
Sbjct: 97 DGEAYHG--YWNT-DFTQLNEHF---GSEDDLIDLITDMHNRDMWIMFDALANSMAIPGP 150
Query: 172 GERVAFGGTAPVFNIASFHDP 110
+ +++ P FN +S+ P
Sbjct: 151 TDNISYSNLVP-FNDSSYFHP 170
>SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 340
Score = 27.1 bits (57), Expect = 3.1
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -1
Query: 628 HFGQVCALRCHKDRPYMFASAAWDKTLRIWDIRCQVGCVMTFE 500
H G V AL K + S + D T+++WD R + C+ T E
Sbjct: 134 HAGVVNALDVLKVGSELLTSVSDDCTMKVWDSRSK-DCIKTIE 175
Score = 25.4 bits (53), Expect = 9.4
Identities = 17/81 (20%), Positives = 31/81 (38%)
Frame = -1
Query: 628 HFGQVCALRCHKDRPYMFASAAWDKTLRIWDIRCQVGCVMTFEGVDVCSDSIDLNRDHCI 449
H +V R Y FAS D+ + +W++ V G + +RD +
Sbjct: 49 HTAEVLVARFDPSGSY-FASGGMDRQILLWNVFGDVKNYGVLNGCKGAITDLQWSRDSRV 107
Query: 448 AGSWQATEALTVWDLVARKRM 386
+ L WD V+ +++
Sbjct: 108 VYCSSSDTHLMSWDAVSGQKI 128
>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 524
Score = 26.6 bits (56), Expect = 4.0
Identities = 10/20 (50%), Positives = 14/20 (70%), Gaps = 2/20 (10%)
Frame = -1
Query: 586 PY--MFASAAWDKTLRIWDI 533
PY +FAS +WD +R+W I
Sbjct: 421 PYSNLFASGSWDGNIRLWKI 440
>SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit
Swd2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 357
Score = 26.6 bits (56), Expect = 4.0
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -1
Query: 577 FASAAWDKTLRIWDIR 530
F SA+ D T+R+WD+R
Sbjct: 127 FLSASLDNTIRLWDLR 142
>SPAC4D7.05 |sum1|tif34|translation initiation factor
eIF3i|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 26.2 bits (55), Expect = 5.4
Identities = 18/81 (22%), Positives = 36/81 (44%)
Frame = -1
Query: 628 HFGQVCALRCHKDRPYMFASAAWDKTLRIWDIRCQVGCVMTFEGVDVCSDSIDLNRDHCI 449
H + ++ + D +F S A DK + +W + T+EG + D+N+ +
Sbjct: 9 HERPLTQIKYNHDGDLLF-SCAKDKVINVW-FSHNGERLGTYEGHTGAIWTCDINKSSTL 66
Query: 448 AGSWQATEALTVWDLVARKRM 386
S A + +WD+ K++
Sbjct: 67 MVSGAADNTMRLWDVKTGKQL 87
>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 314
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = -1
Query: 628 HFGQVCALRCHKDRPYMFASAAWDKTLRIWDIR 530
H V A+ H D ++ A+++ D T+++WD+R
Sbjct: 82 HTNNVTAIAFHCDGKWL-ATSSEDGTVKVWDMR 113
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -1
Query: 628 HFGQVCALRCHKDRPYMFASAAWDKTLRIWDIR 530
H Q+ A+ Y A+++ D T++IWD+R
Sbjct: 348 HIRQIVAM-AWSPNGYQLATSSADDTVKIWDLR 379
>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -1
Query: 628 HFGQVCALRCHKDRPYMFASAAWDKTLRIWDIR 530
H V L+ +F+S + D T RIWD+R
Sbjct: 290 HTAAVEDLQWSPSEKNVFSSCSCDGTFRIWDVR 322
>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 688
Score = 25.8 bits (54), Expect = 7.1
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -1
Query: 424 ALTVWDLVARKRMNVIRVQNRRQDVDGEY 338
A T+W+ + + V V+ R +VDGE+
Sbjct: 631 ARTLWEAIVERVEQVGSVRTRESEVDGEW 659
>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 636
Score = 25.4 bits (53), Expect = 9.4
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 126 AMLNTGAVPPKATLSPWLATARTVP 200
A L +G+VPP A++S +TA T P
Sbjct: 137 AELPSGSVPPSASVSRANSTATTTP 161
>SPAC343.17c |||WD repeat protein, human WDR70
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 576
Score = 25.4 bits (53), Expect = 9.4
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = -1
Query: 643 KLQRMHFGQ--VCALRCHKDRPYMFASAAWDKTLRIWDIRCQVGCV 512
K++ H Q + L +D Y+ S D LR+WD+R CV
Sbjct: 290 KIKDAHLPQQGISCLSFSQDGNYLL-SRGEDNALRVWDLRNSNKCV 334
>SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 25.4 bits (53), Expect = 9.4
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -1
Query: 628 HFGQVCALRCHKDRPYMFASAAWDKTLRIWDIRCQ 524
H +V L + P + S ++DKT +I D+R +
Sbjct: 296 HSDKVSCLDWYSKAPSVLLSGSYDKTAKIADLRLE 330
>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 719
Score = 25.4 bits (53), Expect = 9.4
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +3
Query: 336 MYSPSTSCRRFCTLITFILFRATKSHTVNASVACQL 443
+ +PS+ FC+LI FI H V A +L
Sbjct: 47 LVNPSSDISEFCSLIDFISQTCNYYHDVTADFPSEL 82
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,270,046
Number of Sequences: 5004
Number of extensions: 70740
Number of successful extensions: 279
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 272
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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