Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11j17
         (790 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    24   1.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.2  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    23   4.3  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   7.5  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    21   9.9  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +2

Query: 500 FERHNAADLTPYVPNSQSFVPGSTR 574
           + +HN    T Y+P S S +   T+
Sbjct: 387 YSKHNTQQFTQYIPESSSNLQEKTK 411


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -2

Query: 690 SRLTKSTNSVFSLYRRSYRECTSVK 616
           +RLT S N++ S+   ++R C+ +K
Sbjct: 410 NRLTLSGNAIASIDPLAFRNCSDLK 434


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
          protein ASP1 protein.
          Length = 144

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -2

Query: 75 LISNTRKVSYYATKILCEIDFFLN 4
          ++SNT++   Y+  +LC    F+N
Sbjct: 1  MVSNTKQAFIYSLALLCLHAIFVN 24


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 56  FLVFDINFFFVICLLLVLRI 115
           +L+F  NF F +C L +L +
Sbjct: 10  YLLFIFNFVFAVCGLGILTL 29


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +3

Query: 378 ITFILFRATKSHTVNASVACQLPAMQWSL 464
           +T + ++ATK H V+   A  +  + +SL
Sbjct: 139 LTLLAYQATKIHAVDTYAASVVGYLLYSL 167


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,834
Number of Sequences: 438
Number of extensions: 4696
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)