Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11j15
         (791 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    24   1.4  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   3.3  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   5.7  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   5.7  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   5.7  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -3

Query: 408 CIYFVKEFMKLKGLDDYEIMIMIDLVIEQGNLK*EFGFHYTENGDKL 268
           C+ F ++  + K LDD +I+    +   + NLK +    Y  NG+++
Sbjct: 117 CLKFEEQKRRKKSLDDVKILRNDRIDSYKSNLKCDKCSTYQSNGEEV 163



 Score = 21.4 bits (43), Expect = 9.9
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +3

Query: 405 YKKNIMCTKCQEF 443
           YK N+ C KC  +
Sbjct: 144 YKSNLKCDKCSTY 156


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
 Frame = +2

Query: 647 INXNASIKHWLGIHSSYYSSDFL---KSQTI*FFHNFNSTLQLYSLKVMNE 790
           I  N   K+WL +H+SY S   L   K  +I  +H + +   L    V+ +
Sbjct: 429 IAENLLEKNWLPVHTSYKSGLNLEQEKKDSISHYHLYTNLTALRKRDVLKK 479


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 674 WLGIHSSYYSSDFLKSQT 727
           W+GIH    +SD   +QT
Sbjct: 353 WMGIHEPETTSDATSAQT 370


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +2

Query: 668 KHWLGIHSSYYSSDFLKSQTI*FFHNFNSTLQLYSLKV 781
           + W  + ++  +     SQ     H+F STL + S+K+
Sbjct: 360 RSWSSLDNTNTNDQDYSSQNYLTVHSFPSTLNIPSVKI 397


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 674 WLGIHSSYYSSDFLKSQT 727
           W+GIH    +SD   +QT
Sbjct: 353 WMGIHEPETTSDATSAQT 370


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,822
Number of Sequences: 438
Number of extensions: 5139
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)