Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11j09
(806 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces pombe... 28 1.8
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 27 3.1
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom... 27 3.1
SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo... 26 5.5
SPBC354.01 |gtp1|SPBC649.06|GTP binding protein Gtp1|Schizosacch... 26 7.2
SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces po... 26 7.2
SPAC3A11.11c |||pyridoxal reductase |Schizosaccharomyces pombe|c... 26 7.2
SPBC1711.13 |his2||histidinol dehydrogenase His2 |Schizosaccharo... 25 9.6
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 25 9.6
>SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 526
Score = 27.9 bits (59), Expect = 1.8
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Frame = -1
Query: 800 NGGLMDNAFKYIKDNGGIDTEQTY----PYEGVDDKCR-YNPKNTGAEDVGFVDIP 648
+G ++DN KDN G+D +Q + Y GV K PK + +V F +P
Sbjct: 229 DGTILDNLVTLRKDNTGLDIKQLFIGSEGYLGVITKLSVICPKRPSSTNVAFFGVP 284
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 27.1 bits (57), Expect = 3.1
Identities = 18/69 (26%), Positives = 31/69 (44%)
Frame = -1
Query: 782 NAFKYIKDNGGIDTEQTYPYEGVDDKCRYNPKNTGAEDVGFVDIPEGDEQKLMEAVATVG 603
N ++Y+KD+ I +GVDDK + + +GF D D ++ + +G
Sbjct: 293 NDYRYLKDSVHI-------IDGVDDKEEFKTLLAAFKTLGFDDKENFDLFNILSIILHMG 345
Query: 602 PVSVAIDAS 576
+ V D S
Sbjct: 346 NIDVGADRS 354
>SPCC63.03 |||DNAJ domain protein, DNAJC11
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 642
Score = 27.1 bits (57), Expect = 3.1
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -1
Query: 602 PVSVAIDASHTSFQLYSSGVYNEEECSSTDLDHG 501
P S + D SF +SSG +++E + +D D G
Sbjct: 173 PTSFSNDLKKPSFNSFSSGSFDDEFSAPSDEDEG 206
>SPCC553.12c ||SPCC794.13|conserved fungal
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 521
Score = 26.2 bits (55), Expect = 5.5
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Frame = -1
Query: 329 SLPRSCNIHISYVYLWLS--YLCNMYNS 252
+LP S + I YVY W LCN+ +S
Sbjct: 290 TLPHSSTVAIMYVYSWTGTVSLCNLVSS 317
>SPBC354.01 |gtp1|SPBC649.06|GTP binding protein
Gtp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -1
Query: 767 IKDNGGIDTEQTYPYEGVDDKCRYN 693
IK NGGI T P +D K YN
Sbjct: 180 IKKNGGIKFNHTVPLTHMDYKMAYN 204
>SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 451
Score = 25.8 bits (54), Expect = 7.2
Identities = 24/116 (20%), Positives = 41/116 (35%), Gaps = 1/116 (0%)
Frame = -1
Query: 782 NAFKYIKDNGGIDTEQTYPYEGVDDKCRYNPKNTGAEDV-GFVDIPEGDEQKLMEAVATV 606
N K++ NG I Q P DD N G D + P + ++
Sbjct: 100 NGPKHVAKNGLIPLTQRKPNCVWDDAPVDNDSTAGNLDSDSALPTPSVTTNEAADSSRAS 159
Query: 605 GPVSVAIDASHTSFQLYSSGVYNEEECSSTDLDHGVLVVGYGTDEQGVDYWLVKNS 438
PV+ + ++ +S + N ++TD+ G D+ D K+S
Sbjct: 160 SPVTRVVAVHDNKKKIINSNISNAPPFNNTDVQASARPPAAGQDDSAADASTTKSS 215
>SPAC3A11.11c |||pyridoxal reductase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 334
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +3
Query: 435 PRVLHEPVVHALLVGAVT 488
P V H P+ H LL G VT
Sbjct: 198 PLVAHSPLAHGLLTGRVT 215
>SPBC1711.13 |his2||histidinol dehydrogenase His2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 25.4 bits (53), Expect = 9.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 659 VDIPEGDEQKLMEAVATVGPVSVAID 582
+D+P G + L+ A T P SVA+D
Sbjct: 237 IDLPAGPSEVLVIADETCNPESVALD 262
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.4 bits (53), Expect = 9.6
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +1
Query: 580 ASMATETGPTVATASISFCSSPSGMSTKPTSSAPVFLGLYLHLSSTP 720
+S A T P + ++++ S+P ST +S P+ ++ SSTP
Sbjct: 1646 SSTALNTSPPITSSTVVNSSTPITSSTVVNTSTPITSSTVVN-SSTP 1691
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,530,059
Number of Sequences: 5004
Number of extensions: 44443
Number of successful extensions: 158
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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