Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11j08
(813 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom... 29 0.79
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p... 29 1.0
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo... 28 1.8
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 2.4
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p... 27 2.4
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 27 3.2
SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces po... 27 3.2
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po... 27 4.2
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c... 26 7.3
SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||... 26 7.3
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ... 26 7.3
SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces pomb... 26 7.3
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 25 9.7
SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyc... 25 9.7
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation... 25 9.7
>SPBC16C6.06 |pep1|vps10|sorting receptor for
CPY|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1466
Score = 29.1 bits (62), Expect = 0.79
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = -1
Query: 600 PNTPKKNAKSRGKIVAEFVKSKNEAASYVQEMKSYFEECNNFIFVAMDFGNT 445
P+ P +N KS A S E + ++C + +FV++DFG+T
Sbjct: 793 PSPPNQNGKSLFSFHPSRPAWLLYAGSENCEKNPFADDCRDVVFVSLDFGDT 844
>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 718
Score = 28.7 bits (61), Expect = 1.0
Identities = 20/87 (22%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Frame = -1
Query: 303 KGLNKISMKSKLLE-ELTALLKCNERHLPDAQLQERRPNLYEELSSIF--VCVPEERYGT 133
K + +++M L+ +L L K N H+P+ E N+Y LS+I+ + P +
Sbjct: 552 KDMGELNMIIDLIRNDLHQLAKKNSVHVPELYSVEEHSNVYSLLSNIYGRIESPITAWDV 611
Query: 132 RAQTILLLTKTGHLEVHEISMKSPIDK 52
+++ + TG ++ + M P+++
Sbjct: 612 LSKSFPPGSMTGAPKLRSVRMLEPLEQ 638
>SPBC215.01 ||SPBC3B9.20|GTPase activating
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 27.9 bits (59), Expect = 1.8
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = -1
Query: 321 KMHDICKGLNKISMKSKLLEELTAL--LKCNERHLPDAQLQERRPNLYEELSSIF 163
K+ D K LNK+ K +LLE AL L C R + L++ PN + L +F
Sbjct: 13 KLPDSSKNLNKLRWKFRLLESQFALYSLPCQLRFVHYNNLED--PNSFNGLLYLF 65
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.5 bits (58), Expect = 2.4
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -1
Query: 594 TPKKNAKSRGKIVAEFVKSKNEAASYVQEMKSYFEECNNFI 472
T ++N K+ AE K KNE+ + +++MK+Y N I
Sbjct: 1109 TQERNRTISSKL-AEMEKQKNESKAALEQMKNYVTNIENNI 1148
>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1040
Score = 27.5 bits (58), Expect = 2.4
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Frame = -1
Query: 510 EMKSYFEECNNFIFVAMDFGNTTPVINSFTNVTNSITTH---TDPC----LGFGNSLPDM 352
E KSY NN +F TTPV SF T +I T+ + C GF +L M
Sbjct: 574 EFKSYVLFKNNLVFSETKHFGTTPV--SFRRFTMNIGTYIICNNDCPHMVYGFNGALCYM 631
Query: 351 PLKKVEAGLTKMHDICK 301
PL + + +D+C+
Sbjct: 632 PL-----SMPQSYDVCQ 643
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 27.1 bits (57), Expect = 3.2
Identities = 32/142 (22%), Positives = 58/142 (40%), Gaps = 8/142 (5%)
Frame = -1
Query: 567 GKIVAEFVKSKNEAA-SYVQEMKSYFEECNNFIFVAMDFGNTTPV-----INSFTNVTNS 406
GKIV+ F++ +NE+ + + S+ + N+ I A + N S + +
Sbjct: 803 GKIVSNFLQEQNESLYTKADILHSHLNDTNSNIRKANEIMNNRSEEFLRNAASQAEIVGA 862
Query: 405 ITTHTDPCLGFGNSLPDMPLKKVEAGLTKMHDICKGLNKISMKSKLLE--ELTALLKCNE 232
+ G+ L D K + + M+D C L + + LE L LL+ +
Sbjct: 863 NKERIQKTVENGSQLLDSKSKAIHSNSRSMYDHCLALAESQKQGVNLEVQTLDRLLQKVK 922
Query: 231 RHLPDAQLQERRPNLYEELSSI 166
H D +E+ L + L S+
Sbjct: 923 EHSED-NTKEKHQQLLDLLESL 943
>SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 330
Score = 27.1 bits (57), Expect = 3.2
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -1
Query: 513 QEMKSYFEECNNFIFVAMDFGNTTPVINSFTNVTNSIT 400
Q + YFE+ N FI A+ N +++ F ++ S+T
Sbjct: 104 QNILQYFEKSNKFIAFALS-KNAKVLVHCFAGISRSVT 140
>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1076
Score = 26.6 bits (56), Expect = 4.2
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Frame = +2
Query: 251 AVNSSKSLLFIEI-LLS------PLQISCILVRPASTFFNGISGKLFPKPKQGSVCVVIE 409
AV SK ++F ++ LL+ P I+ I P GIS K + G+V ++
Sbjct: 364 AVALSKHIIFFDLDLLNNISFPIPRSINAIQQLPCFLIDTGISAKEYDFSYDGTVFATVD 423
Query: 410 FVTFVKLFMTGVVFPKS 460
+K++ FP +
Sbjct: 424 KDALIKIYTVPTTFPST 440
>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 865
Score = 25.8 bits (54), Expect = 7.3
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = +1
Query: 559 NFTSAFCIFLWCIW*IQKYSHFLSEGRHSK 648
NF+ A +WC++ + SH++ E + K
Sbjct: 671 NFSFAIAFKIWCMFALDPKSHYMIEDPYMK 700
>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
1|||Manual
Length = 459
Score = 25.8 bits (54), Expect = 7.3
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = +2
Query: 290 LLSPLQISCILVRPASTFFNGISGKLFPKPKQGSVCVVIEFVTFVKLFMTGVVFPKSI 463
LL PL I +L ++ G+S +L P +V + F + + + +FP S+
Sbjct: 330 LLFPLCILLVLYLVSNFLSVGVSRRLANTPYVANVAFINMFFLTIYILIDAYLFPSSV 387
>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 774
Score = 25.8 bits (54), Expect = 7.3
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -1
Query: 636 PLRKKMGVLLNLPNTPKKNAKSRGKIVAEFVKSKNEA 526
P +K+M +L +T KK KSR I + + SK EA
Sbjct: 2 PPKKRMKNGSSLKSTSKKGEKSRNIITIQDLFSKREA 38
>SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 414
Score = 25.8 bits (54), Expect = 7.3
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -1
Query: 318 MHDICKGLNKISMKSKLLEELTALLKCN 235
M D C+ L+ I LEE + L CN
Sbjct: 122 MLDCCRSLSDIEKDGVTLEEFSCLANCN 149
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 25.4 bits (53), Expect = 9.7
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +2
Query: 188 KLGLRSCSWASGRCLSLHFKSAVNSSKSLLFIEILLSPLQISCILVRPASTFFN 349
KLG R+ + GR L +N+ LL + LL+P +RP + +N
Sbjct: 1242 KLGFRTINEMVGRSDKLKVAEPINNKSKLLDLTPLLTP----AFTLRPGAATYN 1291
>SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 275
Score = 25.4 bits (53), Expect = 9.7
Identities = 15/72 (20%), Positives = 31/72 (43%)
Frame = -1
Query: 279 KSKLLEELTALLKCNERHLPDAQLQERRPNLYEELSSIFVCVPEERYGTRAQTILLLTKT 100
++K + + A L+C RH+ AQ+ + + E GT+ + I +K
Sbjct: 26 RTKCFDSVYAALQCGYRHIDSAQMYHNEADCGRAILKFM-----EETGTKREDIWFTSKL 80
Query: 99 GHLEVHEISMKS 64
L ++ ++ S
Sbjct: 81 NDLSGYKSTLSS 92
>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
specificity factor complex subunit
Pta1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = +3
Query: 9 RGQIGIYVFPTWVLFYQLVISWIFRVLLNDQ 101
RGQ+ YV W L+++W+ ND+
Sbjct: 551 RGQLFTYVASNWRSSTNLILNWLSEEWYNDR 581
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,480,297
Number of Sequences: 5004
Number of extensions: 75024
Number of successful extensions: 240
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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