Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11j08
(813 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0440 - 9423874-9423999,9424199-9424393,9424885-9425091,942... 56 3e-08
07_01_0698 - 5269329-5269579,5270673-5270928,5271158-5271725,527... 38 0.009
04_01_0520 - 6852701-6855028,6855050-6855835,6856085-6856093 31 1.4
03_05_0976 - 29341981-29342229,29342388-29342621,29342771-293430... 29 3.3
07_01_0579 + 4299104-4299652,4300845-4300935,4301018-4301211,430... 29 4.4
06_01_0186 + 1454533-1454710,1455299-1455420,1455508-1455806,145... 29 4.4
04_03_0399 - 15414405-15416717,15416739-15417524,15417776-15417784 29 4.4
02_02_0509 - 11064209-11064470,11065945-11066132,11066249-110664... 29 4.4
01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989... 29 4.4
03_01_0309 - 2432395-2433271,2433494-2434495,2434538-2435073,243... 29 5.8
03_06_0496 + 34328702-34329674,34329726-34330631,34330858-343310... 28 7.7
>09_02_0440 -
9423874-9423999,9424199-9424393,9424885-9425091,
9425518-9425707,9425849-9425931
Length = 266
Score = 56.4 bits (130), Expect = 3e-08
Identities = 63/256 (24%), Positives = 104/256 (40%), Gaps = 7/256 (2%)
Frame = -1
Query: 798 YDADSDYSLIVATNRDEFYDRPSAELAPWKDNPNIIXXXXXXXXXXXGTWLAVSPLRKKM 619
+ A + L++ NRDEF+ RP+ + W + I GTW+ + ++
Sbjct: 8 WQAHPQHQLLLLLNRDEFHSRPTKAVGWWGEGSKKI--LGGRDVLGGGTWMGCTK-DGRL 64
Query: 618 GVLLN-LPNTPKKNAKSRGKIVAEFVKSKNEAASYVQEMKSYFEECNNFIFVAMDFGNTT 442
L N L A++RG + F++S E+ +E N F V D
Sbjct: 65 AFLTNVLEPDAMPGARTRGDLPLRFLQSNKSPLEVATEVAKEADEYNGFNLVLADLTTNV 124
Query: 441 PVINSFTNVTNSITTH-TDPCLG-FGNSLPDMPLKK-VEAGLTKMHDICK-GLNKISMKS 274
V S T P L N+ D P +K + G + K G +++ K
Sbjct: 125 MVYVSNRPKGQPATIQLVSPGLHVLSNARLDSPWQKAIRLGKNFREHLRKHGDDEVEAKD 184
Query: 273 KLLEELTALLKCNERHLPDAQLQERRPNLYEELSSIFVCVPEER--YGTRAQTILLLTKT 100
+ +T K ++ LP+ PN LSSIF+ V ++ YGTR+ +L +
Sbjct: 185 IVERLMTDTTKADKDRLPNTGCD---PNWEHGLSSIFIEVQTDQGLYGTRSTAVLSVNYD 241
Query: 99 GHLEVHEISMKSPIDK 52
G ++E ++S I K
Sbjct: 242 GEASLYEKYLESGIWK 257
>07_01_0698 -
5269329-5269579,5270673-5270928,5271158-5271725,
5271757-5272763
Length = 693
Score = 37.9 bits (84), Expect = 0.009
Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 3/119 (2%)
Frame = -1
Query: 558 VAEFVKSKNEAASYVQEMKSYFEECNNFIFVAMDFGNTTPVINSFTNVTNSITTHTDPCL 379
+A V + ++ S++Q K E+ N F F +D T +INS + + T
Sbjct: 22 IAAVVATIDKIYSHLQLDKGSLEKKNGFCFGLLD-PVTNILINSAISELSPATAAQAVVG 80
Query: 378 GFGNSLPDM---PLKKVEAGLTKMHDICKGLNKISMKSKLLEELTALLKCNERHLPDAQ 211
G G D+ +VEAG +G N + + L+ LTA L C +LPDA+
Sbjct: 81 GGGEKAKDLNNNAAPRVEAGGGSRKRRRRGDNAADLSQRSLDGLTAFLTCLFPYLPDAE 139
>04_01_0520 - 6852701-6855028,6855050-6855835,6856085-6856093
Length = 1040
Score = 30.7 bits (66), Expect = 1.4
Identities = 27/67 (40%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Frame = -1
Query: 369 NSLPDMP-LKKVEAG-LTKMHDICKGLNKISMKSKLLEELTALLKCNERHLPDAQ-LQER 199
N D P LK V L + IC+ KI M + +LE + C+ RHLPD Q L E
Sbjct: 915 NDAIDFPKLKHVHLHELPSLKGICEA--KI-MSAPMLEAIMIRGCCSLRHLPDVQGLHEP 971
Query: 198 RPNLYEE 178
RP +Y E
Sbjct: 972 RPIVYCE 978
>03_05_0976 -
29341981-29342229,29342388-29342621,29342771-29343046,
29343181-29343457,29343549-29343847,29344021-29344152,
29344451-29344660,29344812-29344875,29346114-29346260,
29346477-29346760
Length = 723
Score = 29.5 bits (63), Expect = 3.3
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
Frame = +2
Query: 242 FKSAVNSSKSLLFIEILLSPLQ-----ISCILVRPASTFFNGISGKLFPKPKQGSVCVVI 406
F S N K F++++ L +S V P FF+ I G + ++ S C I
Sbjct: 370 FPSLKNMLKKPFFVKLVTGYLPSVVLLLSLYTVPPLMMFFSSIEGSISRSGRKKSACCKI 429
Query: 407 EFVTFVKLFMTGVV 448
F T +F V+
Sbjct: 430 LFFTIWNVFFVNVL 443
>07_01_0579 +
4299104-4299652,4300845-4300935,4301018-4301211,
4301501-4301622,4302378-4302856,4303033-4303334
Length = 578
Score = 29.1 bits (62), Expect = 4.4
Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 1/103 (0%)
Frame = -1
Query: 561 IVAEFVKSKNEAASYVQEMKSYFEECNNFIFVAMDFGNTTPVINSFTNVTNSITTHTDPC 382
I FVKS A + +KSY + +A+ + I+S N+ I
Sbjct: 294 IAVSFVKS----AEVINHLKSYIAARSRGSDIAVIAKIES--IDSLKNLEEIIRASDGAM 347
Query: 381 LGFGNSLPDMPLKKVEAGLTKMHDICKGLNK-ISMKSKLLEEL 256
+ G+ +PL++V + K+ +C+ LNK + + S+LLE +
Sbjct: 348 VARGDMGAQIPLEQVPSVQQKIVKLCRQLNKPVIVASQLLESM 390
>06_01_0186 +
1454533-1454710,1455299-1455420,1455508-1455806,
1455846-1455933,1456015-1456096,1457130-1457242
Length = 293
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +1
Query: 463 CYKNEIITFFKIRFHFLNI*CSLIFTFHKFCYNFTSAFCIF 585
C + E+ K F SLIF HKFC++FT IF
Sbjct: 174 CARREVSRILKSHAFFC---LSLIFHLHKFCWSFTFPQDIF 211
>04_03_0399 - 15414405-15416717,15416739-15417524,15417776-15417784
Length = 1035
Score = 29.1 bits (62), Expect = 4.4
Identities = 26/67 (38%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Frame = -1
Query: 369 NSLPDMP-LKKVEAG-LTKMHDICKGLNKISMKSKLLEELTALLKCNERHLPDAQ-LQER 199
N D P LK V L + IC+ KI M + +LE + C+ RHLPD + L E
Sbjct: 910 NDAIDFPKLKHVHLHELPSLKGICEA--KI-MSAPMLETILIRGCCSLRHLPDVKGLHEP 966
Query: 198 RPNLYEE 178
RP +Y E
Sbjct: 967 RPIVYCE 973
>02_02_0509 -
11064209-11064470,11065945-11066132,11066249-11066493,
11066816-11066987,11067090-11067496,11068443-11068587
Length = 472
Score = 29.1 bits (62), Expect = 4.4
Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 1/71 (1%)
Frame = -1
Query: 585 KNAKSRGKIVAEFVKSKNEA-ASYVQEMKSYFEECNNFIFVAMDFGNTTPVINSFTNVTN 409
+ +S G A V SK S Q S E + V D+ P + TNV
Sbjct: 32 RRLRSHGAAAAAPVASKGHLFLSQRQPRTSNLEAVGDVTAVPEDYTENMPSSSGSTNVAT 91
Query: 408 SITTHTDPCLG 376
SI++H D G
Sbjct: 92 SISSHEDNLAG 102
>01_06_0124 -
26692731-26697046,26698749-26698827,26698899-26698955,
26699321-26699416
Length = 1515
Score = 29.1 bits (62), Expect = 4.4
Identities = 26/96 (27%), Positives = 40/96 (41%)
Frame = -1
Query: 537 KNEAASYVQEMKSYFEECNNFIFVAMDFGNTTPVINSFTNVTNSITTHTDPCLGFGNSLP 358
KNEA + E+ + EE N I + TN+ N +T H + C + L
Sbjct: 525 KNEAVASTLELGNKLEEKNQQISNLQEAVENLEAAK--TNMYNEVTVHQEKCTFLSSQLE 582
Query: 357 DMPLKKVEAGLTKMHDICKGLNKISMKSKLLEELTA 250
L + E T + +I K N+ M S+ + L A
Sbjct: 583 KAQLAEKEV-QTLLSEIEKMKNENLMLSRENDNLKA 617
>03_01_0309 -
2432395-2433271,2433494-2434495,2434538-2435073,
2435579-2435716,2436050-2436148,2436278-2436346,
2436968-2437063
Length = 938
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Frame = +3
Query: 498 KISFLEHMMQPHFYFSQILLQFYLGFLHF----SLVYLVNSKVL 617
++ LE++ PHF +IL + + F+H+ + YL+N L
Sbjct: 492 EVFLLENLFHPHFLCLEILTELWCFFMHYAEAETSTYLINQLFL 535
>03_06_0496 +
34328702-34329674,34329726-34330631,34330858-34331062,
34331152-34331348,34331434-34331492
Length = 779
Score = 28.3 bits (60), Expect = 7.7
Identities = 11/42 (26%), Positives = 25/42 (59%)
Frame = -1
Query: 306 CKGLNKISMKSKLLEELTALLKCNERHLPDAQLQERRPNLYE 181
C L +++++ +L + + C+ RH+ Q+ ++R NL+E
Sbjct: 637 CPNLTRLAVR--ILSQTCSAKGCDRRHISFEQIHDQRMNLFE 676
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,455,635
Number of Sequences: 37544
Number of extensions: 407177
Number of successful extensions: 992
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 991
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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