Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11j07
         (401 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    30   0.15 
SPCC14G10.01 ||SPCC18B5.12|dephospho-CoA kinase |Schizosaccharom...    28   0.62 
SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein P...    26   2.5  
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    25   5.8  
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma...    24   7.7  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    24   7.7  

>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 29.9 bits (64), Expect = 0.15
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 148 HLIVSRHPHQHKQLRNFSRCHFVNSESL*II 240
           HLI    P + K+L+   RCHF N + + +I
Sbjct: 578 HLITFEPPLEEKKLKAIDRCHFTNVKKVILI 608


>SPCC14G10.01 ||SPCC18B5.12|dephospho-CoA kinase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 236

 Score = 27.9 bits (59), Expect = 0.62
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 314 LITINQLLKKNYKNLHNAQPLSDIFYFFT 400
           +I  N  L+  Y+N+HN  PL    YFFT
Sbjct: 176 VIENNSDLETLYENIHNVLPLITPSYFFT 204


>SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein
           Pvg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 389

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +2

Query: 323 INQLLKKNYKNLHNA 367
           +N+L+ K+Y NLHNA
Sbjct: 163 LNELVDKSYHNLHNA 177


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
            subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -1

Query: 95   KAQVYH*ISADIVVE-IPLVHIGVVNS*SGKV 3
            + Q Y  +  D+VV  IP ++  V+N  SGK+
Sbjct: 1206 RLQTYKRVLPDVVVAGIPTINRSVINQESGKI 1237


>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 630

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 3   YFSTLGINNPYMYQRNLDDDVRTY 74
           YF +LG+N P +   N  +D+  Y
Sbjct: 98  YFRSLGVNVPIVLCENKSEDLDNY 121


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +1

Query: 316  NYY*SIVKEKLQKFTQCTTTFRHFLLF 396
            NY   I K  L     C T F H LLF
Sbjct: 946  NYKSGIWKLVLSGLPNCKTVFEHLLLF 972


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,606,352
Number of Sequences: 5004
Number of extensions: 29336
Number of successful extensions: 56
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)