Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11j05
         (661 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase |Schizosaccha...    29   0.45 
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ...    28   1.0  
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo...    28   1.4  
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran...    28   1.4  
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ...    27   1.8  
SPAC1F5.05c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.4  
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   5.5  
SPAC644.04 |pct1||RNA 5'-triphosphatase|Schizosaccharomyces pomb...    25   7.3  
SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr 1...    25   7.3  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    25   9.7  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    25   9.7  

>SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 473

 Score = 29.5 bits (63), Expect = 0.45
 Identities = 17/62 (27%), Positives = 28/62 (45%)
 Frame = -3

Query: 581 ESIKKGRSVKVPITSTLISDNDRTRIYKVVRFINRKPQKGSIQIDLTSRAKKTSKYTETE 402
           E + K         STL  DNDR +    V    ++ +KG + I    R K +  +++ +
Sbjct: 297 EGVPKDSKATTFAASTLHVDNDRWKGVPFVFVSGKRMKKGEVYIKYYFRLKDSGIFSDVK 356

Query: 401 RR 396
           RR
Sbjct: 357 RR 358


>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 817

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -2

Query: 276 GELLTAHGGGEMGAYLPQSRNKTVLRSLGEHETGGRVERLRF 151
           G+++ A G G+ G Y+P   +K  L +L ++  GG  + L F
Sbjct: 742 GDVIHALGSGKEGTYIPYRNSK--LTNLLQYSLGGNSKTLMF 781


>SPCC1682.03c |mug174||meiotically upregulated gene
           Mug174|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 626

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = -3

Query: 638 TPSKIDTESISAKGLCENDES-IKKGRSVKVPITSTLISDN 519
           +PSK+ +E+      CEN E   ++G++   P++ ++ S+N
Sbjct: 369 SPSKLSSETTKVHRGCENTEKPSEEGKNFTTPLSDSVESEN 409


>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 516

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 17/73 (23%), Positives = 33/73 (45%)
 Frame = -3

Query: 470 QKGSIQIDLTSRAKKTSKYTETERREAKRPPEIASGVDKKPDIKNSGSRRRFRRKQVASP 291
           QK + + +  ++AK   + +  +  E+   PE++  +D    I +     R       + 
Sbjct: 182 QKETARDEKITKAKIALQASRAKSTESTSSPELSHSLDSSKSIASDMPIHRASHTTGYAA 241

Query: 290 ASLRKASFSPPTE 252
           ASL   SF+P T+
Sbjct: 242 ASLTSTSFTPVTK 254


>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 797

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
 Frame = -3

Query: 413 TETERREAKRPPEIASGVDKKPDIKNSGSRRRFRRKQVASPASLRK--ASFSPPTEVAKW 240
           TE +R+EA    EI+   D+K  +K    R + ++K + S   + K   S++ P  +A  
Sbjct: 163 TEKQRKEAIARGEISDSEDEKHTVKQKPLREK-KKKPLKSSEEISKDMGSYNLPRFLASL 221

Query: 239 APTCLNRETK 210
               LN +TK
Sbjct: 222 IDASLN-DTK 230


>SPAC1F5.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 151

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 17/55 (30%), Positives = 23/55 (41%)
 Frame = +2

Query: 242 ISPPPWAVRSSPSSKTPATRPASA*TVSGCHCSLYPAFYRRLTQSRAVVSLPAAR 406
           + PP W    +    +P +  AS    S    S  PA  RRL+ S +  S P  R
Sbjct: 47  LRPPGWQPPVNTGPTSPVSINASNAAPSNLKASYIPANPRRLSSSTSSASSPPLR 101


>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 557

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
 Frame = -3

Query: 485 INRKPQKGSIQIDLTSR--AKKTSKYTETERREAKRPPEIASGVDKKPDIKNSGSRRRFR 312
           +N+K +K  +++    R  A++  +  E   +E  + PE+ S  D   DIK   SR+   
Sbjct: 9   LNKKMEKIEVEMAEFERLGAEREKEAVERIVQEENQNPEVPSNDDASTDIK---SRKEGN 65

Query: 311 RKQVASPASLRKASF 267
            K  A    L   +F
Sbjct: 66  MKVTAEEIGLETENF 80


>SPAC644.04 |pct1||RNA 5'-triphosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
 Frame = -3

Query: 593 CENDE-SIKKGRSVKVPITSTLISDNDRTRIYKVVRFINRKPQKGSIQIDLTSRAKKTSK 417
           C ND   I+   S ++P++  + S N +  + ++   +    Q+  I+IDLT   +    
Sbjct: 195 CPNDAFDIRISISDELPVS--MPSGNQQPSLTRLKDRVGYVHQE--IKIDLTKTTQNDPV 250

Query: 416 YTETERREAK-RPPEIASGVDKKPDIKNSGSRRRFRRKQV 300
           Y  TER E +     IA   D+    K+      FRR Q+
Sbjct: 251 YDTTERHELEVEFGNIADLRDRAQKAKDGMEAPLFRRVQL 290


>SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 588

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 427 FFARDVKSIWILPFCGFRLMNL 492
           + +RD + +WILPF  + L  L
Sbjct: 520 YLSRDNRELWILPFAYYELAAL 541


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -3

Query: 476 KPQKGSIQIDLTSRAKKTSKYTETERREAKRPPEIASGV 360
           K  +G  +++  S     SK     +R+  RPP+IASG+
Sbjct: 339 KRGRGRPRLERPSGLPLDSKSQSLFKRKRGRPPKIASGI 377


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 5/27 (18%)
 Frame = +2

Query: 248 PPPWAV-----RSSPSSKTPATRPASA 313
           PPPWA       SS SS  P  +PAS+
Sbjct: 406 PPPWAAASTSVSSSTSSPAPWAKPASS 432


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,522,575
Number of Sequences: 5004
Number of extensions: 49916
Number of successful extensions: 172
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)