Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11j03
(776 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0544 - 10435796-10435852,10435944-10436288,10436477-10436971 33 0.19
03_02_0824 + 11556128-11556989,11557515-11559134,11559236-11559825 32 0.58
09_02_0433 + 9346464-9347304,9347848-9348470,9348578-9349282 31 1.0
11_02_0085 - 8162346-8162942,8165568-8166100,8166180-8166906 29 4.1
07_03_1745 - 29176951-29178901,29178960-29179069,29179536-29179547 29 4.1
11_06_0294 + 22022630-22024006,22024109-22024234,22024319-220244... 29 5.4
09_02_0391 + 8482996-8483216,8484146-8484194,8484559-8487465 29 5.4
06_03_0151 + 17270688-17270698,17271149-17271281,17271548-172715... 29 5.4
08_01_0387 - 3426058-3426168,3426279-3426473,3426612-3426724,342... 28 7.2
07_01_0985 - 8297560-8297610,8297728-8297939,8298327-8298449,829... 28 9.5
01_06_1077 + 34372486-34372697,34373476-34373547,34373892-343740... 28 9.5
01_01_0558 + 4098383-4098510,4100462-4100572,4100765-4100853,410... 28 9.5
>09_02_0544 - 10435796-10435852,10435944-10436288,10436477-10436971
Length = 298
Score = 33.5 bits (73), Expect = 0.19
Identities = 20/59 (33%), Positives = 30/59 (50%)
Frame = +3
Query: 321 VIIDGYFLGLFCASPGQHRSVQSCSGPVKSHAGRYIFSAGFRLGNWMQEIRHALIVIHI 497
V+I G A PG +++ +G + AGRYIF A F + N + I L +IH+
Sbjct: 216 VLIVTVTFGAILAIPGGYKADDHYNGGTPTLAGRYIFDA-FTMANTIAFICSTLAIIHL 273
>03_02_0824 + 11556128-11556989,11557515-11559134,11559236-11559825
Length = 1023
Score = 31.9 bits (69), Expect = 0.58
Identities = 11/23 (47%), Positives = 18/23 (78%)
Frame = -1
Query: 341 EIAVNDYDATVPEDLPDDEVPLN 273
+++ N+++ T+PEDLPDD V N
Sbjct: 506 DLSKNNFNGTIPEDLPDDLVEFN 528
>09_02_0433 + 9346464-9347304,9347848-9348470,9348578-9349282
Length = 722
Score = 31.1 bits (67), Expect = 1.0
Identities = 25/86 (29%), Positives = 36/86 (41%)
Frame = +3
Query: 321 VIIDGYFLGLFCASPGQHRSVQSCSGPVKSHAGRYIFSAGFRLGNWMQEIRHALIVIHIF 500
V++ G A PG +R+ +G + AGRY F A F + N I A+ I +
Sbjct: 544 VLLATVTFGATFALPGGYRADDHVNGGTPTLAGRYTFHA-FIMANTFALIFAAIATIGLM 602
Query: 501 LFNRFSYTLCERKDYL*RFFVLLETS 578
+ RK YL +ETS
Sbjct: 603 YSGSPLFNSRSRKTYLVTALYCMETS 628
>11_02_0085 - 8162346-8162942,8165568-8166100,8166180-8166906
Length = 618
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +3
Query: 234 VIAAWRQNNL*FLVQWNLVVRKIFWYSRIVIIDGYFLGLFCASP 365
+IA W +L FL+ + + K+ W+S + I + GL+ P
Sbjct: 529 IIAKWE--DLRFLLYYRSITMKLMWFSYMATIIAFATGLYTVLP 570
>07_03_1745 - 29176951-29178901,29178960-29179069,29179536-29179547
Length = 690
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/72 (20%), Positives = 28/72 (38%)
Frame = +3
Query: 288 VVRKIFWYSRIVIIDGYFLGLFCASPGQHRSVQSCSGPVKSHAGRYIFSAGFRLGNWMQE 467
V+ + W + + G+ A+PG H + PV++ I G W +
Sbjct: 44 VLHTVSWIVSSRQVARFSTGVDNANPGAHCRLSELFRPVRTETSCVIIGRALECGRWSES 103
Query: 468 IRHALIVIHIFL 503
+ L +H+ L
Sbjct: 104 VELELEGLHVEL 115
>11_06_0294 +
22022630-22024006,22024109-22024234,22024319-22024423,
22024525-22024659,22024798-22024847,22026487-22026545,
22026819-22026928,22027941-22028174,22028278-22028377,
22028699-22028829,22029834-22029914,22029970-22030128
Length = 888
Score = 28.7 bits (61), Expect = 5.4
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Frame = -1
Query: 431 EDVPAGMRLHGTRARLYTSVLAGASTEQTEEIAVNDYDATVP-----EDLPDDEVPLNEE 267
ED+ AG+ + SVL + TE+ + D+TVP E+LP D L
Sbjct: 533 EDINAGLNIISPE-----SVLQEDDGKATED-NLQGGDSTVPDCNGVEELPGDSKVLQSG 586
Query: 266 LQIILPPRCDDVTAESSVT 210
++ LPPR + T SS T
Sbjct: 587 KKLELPPRANTSTLGSSET 605
>09_02_0391 + 8482996-8483216,8484146-8484194,8484559-8487465
Length = 1058
Score = 28.7 bits (61), Expect = 5.4
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Frame = -1
Query: 755 LQCLSMSNCETLQVPPGIVKHRNSFRSLHRPDLKRVPYLRRMKPDELEL----LFRGYAD 588
LQ L + NC L+ P V H RSL D+ P L ++ + LEL +G+
Sbjct: 587 LQFLILKNCPLLESLPRCVGHLKKLRSL---DISGTPMLNVIQFNLLELTELNCLQGF-- 641
Query: 587 LPARSLQEN 561
+P S+Q+N
Sbjct: 642 VPTTSVQQN 650
>06_03_0151 + 17270688-17270698,17271149-17271281,17271548-17271589,
17271706-17271815,17271957-17272035,17272114-17272287,
17272386-17272466,17272761-17272988,17273067-17273402,
17273501-17273586,17273642-17273783,17274596-17274687,
17274770-17274904,17275142-17275304,17275393-17275482,
17275568-17275753,17276109-17276141,17276700-17276762,
17276839-17276901,17276983-17277042,17277258-17277410,
17277530-17277613,17278434-17278610,17278685-17278791,
17278858-17279071,17279158-17279261,17279926-17280061,
17280191-17280316,17280682-17280792,17280968-17281066,
17281367-17281633,17281707-17281822,17281853-17282084,
17282597-17282664,17282682-17282807,17282980-17283040
Length = 1495
Score = 28.7 bits (61), Expect = 5.4
Identities = 20/57 (35%), Positives = 31/57 (54%)
Frame = -1
Query: 284 VPLNEELQIILPPRCDDVTAESSVTKTG*RKMNSKSIAIQHKLIDEVYT*HVEVKGA 114
VP++EE ++IL D T + +T G +K SIA I+E+Y +V+GA
Sbjct: 1352 VPMDEEDEVIL-----DYTTDPLITDQGFQKSILSSIARAGHAIEELYGSPQDVEGA 1403
>08_01_0387 -
3426058-3426168,3426279-3426473,3426612-3426724,
3427121-3427157,3427270-3427341,3427849-3427962,
3428129-3428200,3428343-3428381,3429340-3429414,
3429561-3429674,3429749-3429813,3429927-3430047,
3430942-3431063,3431547-3431634
Length = 445
Score = 28.3 bits (60), Expect = 7.2
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = -2
Query: 127 KLKVRRKATKLIQKSRKKFAKLLMYMHWILDDLIPV 20
K +R+A + + + RKK + + W++DDL+ +
Sbjct: 195 KSLTKREAEERLSEGRKKLEEAFEHGKWVIDDLVNI 230
>07_01_0985 -
8297560-8297610,8297728-8297939,8298327-8298449,
8298763-8298817,8299940-8300077,8300187-8300261,
8300339-8300398,8301335-8301392,8301948-8302054,
8302484-8302558,8302643-8302838,8304222-8304301,
8308887-8309757,8310672-8310679
Length = 702
Score = 27.9 bits (59), Expect = 9.5
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Frame = -1
Query: 476 MANFLHPIPETKSGAEDVPAGMRLHGTRARLYTSVLAGASTEQTEEIAVN-DYDATVPED 300
+ N + P+P T++ + P A TS + ++ + ++ A D E+
Sbjct: 158 LENSIQPVPSTQNESTTHPESTSHPDDEA---TSPIKKSAKKVVKKCAKRRSQDDDDDEE 214
Query: 299 LPDDEVPLNEELQIILPPRCDDVTAES 219
+ DDE NEE + L P CD + +S
Sbjct: 215 VWDDEKEENEEEEPQLCPNCDPLEVDS 241
>01_06_1077 +
34372486-34372697,34373476-34373547,34373892-34374059,
34374477-34374548,34374628-34374699,34375954-34376023
Length = 221
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = -1
Query: 413 MRLHGTRAR-LYTSVLAGASTEQTEEIAVNDYDATVPEDLPDDEVPLN 273
+RL+G R LAG S+ + +++ ND T+P P + +PL+
Sbjct: 151 LRLNGNRLTGPIPRELAGISSLKVVDVSSNDLCGTIPTSGPFEHIPLS 198
>01_01_0558 + 4098383-4098510,4100462-4100572,4100765-4100853,
4100974-4101107,4101337-4101435,4102619-4102994,
4103883-4104337,4104419-4107409
Length = 1460
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -1
Query: 761 SALQCLSMSNCETLQVPPGIVKHRNSFRSLHRPDLKRVPYLRRM-KPDELELLFRGYADL 585
++L+ L S C L+ P + +S +SLH + + L + P LE LF DL
Sbjct: 1377 TSLKTLVFSECSYLRSLPATLHQISSLKSLHLSSCESIDSLPHLGLPGSLERLFIAGCDL 1436
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,076,836
Number of Sequences: 37544
Number of extensions: 439096
Number of successful extensions: 1184
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1184
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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