Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11j03
         (776 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BX537985-1|CAD97945.1| 1202|Homo sapiens hypothetical protein pr...    32   2.0  
BC132736-1|AAI32737.1| 1843|Homo sapiens coiled-coil domain cont...    32   2.0  
AK001254-1|BAA91584.1|  636|Homo sapiens protein ( Homo sapiens ...    32   2.0  
AB201172-1|BAE44387.1| 1870|Homo sapiens girdin protein.               32   2.0  
AB125644-1|BAF44475.1| 1843|Homo sapiens PKB/Akt-binding protein...    32   2.0  
AB033038-1|BAA86526.2|  802|Homo sapiens KIAA1212 protein protein.     32   2.0  
M10321-1|AAB59512.1| 2074|Homo sapiens F8VWF protein.                  30   8.1  
DQ501251-1|ABF68612.1|  360|Homo sapiens cyclon protein.               30   8.1  
BC001378-1|AAH01378.1|  360|Homo sapiens coiled-coil domain cont...    30   8.1  
AK025974-1|BAB15304.1|  360|Homo sapiens protein ( Homo sapiens ...    30   8.1  

>BX537985-1|CAD97945.1| 1202|Homo sapiens hypothetical protein
           protein.
          Length = 1202

 Score = 32.3 bits (70), Expect = 2.0
 Identities = 20/77 (25%), Positives = 42/77 (54%)
 Frame = -1

Query: 305 EDLPDDEVPLNEELQIILPPRCDDVTAESSVTKTG*RKMNSKSIAIQHKLIDEVYT*HVE 126
           + L D  +  +E+L+++   +  +   ES ++K G  K   K++ ++H+ +++ Y   ++
Sbjct: 325 KSLYDSLIKDHEKLELLHERQASEY--ESLISKHGTLKSAHKNLEVEHRDLEDRYNQLLK 382

Query: 125 VKGAQESYEINTKVEKE 75
            KG  E  E   KVE+E
Sbjct: 383 QKGQLEDLEKMLKVEQE 399


>BC132736-1|AAI32737.1| 1843|Homo sapiens coiled-coil domain
            containing 88A protein.
          Length = 1843

 Score = 32.3 bits (70), Expect = 2.0
 Identities = 20/77 (25%), Positives = 42/77 (54%)
 Frame = -1

Query: 305  EDLPDDEVPLNEELQIILPPRCDDVTAESSVTKTG*RKMNSKSIAIQHKLIDEVYT*HVE 126
            + L D  +  +E+L+++   +  +   ES ++K G  K   K++ ++H+ +++ Y   ++
Sbjct: 1150 KSLYDSLIKDHEKLELLHERQASEY--ESLISKHGTLKSAHKNLEVEHRDLEDRYNQLLK 1207

Query: 125  VKGAQESYEINTKVEKE 75
             KG  E  E   KVE+E
Sbjct: 1208 QKGQLEDLEKMLKVEQE 1224


>AK001254-1|BAA91584.1|  636|Homo sapiens protein ( Homo sapiens
           cDNA FLJ10392 fis, clone NT2RM4000169, weakly similar to
           INTRACELLULAR PROTEIN TRANSPORT PROTEIN USO1. ).
          Length = 636

 Score = 32.3 bits (70), Expect = 2.0
 Identities = 20/77 (25%), Positives = 42/77 (54%)
 Frame = -1

Query: 305 EDLPDDEVPLNEELQIILPPRCDDVTAESSVTKTG*RKMNSKSIAIQHKLIDEVYT*HVE 126
           + L D  +  +E+L+++   +  +   ES ++K G  K   K++ ++H+ +++ Y   ++
Sbjct: 29  KSLYDSLIKDHEKLELLHERQASEY--ESLISKHGTLKSAHKNLEVEHRDLEDRYNQLLK 86

Query: 125 VKGAQESYEINTKVEKE 75
            KG  E  E   KVE+E
Sbjct: 87  QKGQLEDLEKMLKVEQE 103


>AB201172-1|BAE44387.1| 1870|Homo sapiens girdin protein.
          Length = 1870

 Score = 32.3 bits (70), Expect = 2.0
 Identities = 20/77 (25%), Positives = 42/77 (54%)
 Frame = -1

Query: 305  EDLPDDEVPLNEELQIILPPRCDDVTAESSVTKTG*RKMNSKSIAIQHKLIDEVYT*HVE 126
            + L D  +  +E+L+++   +  +   ES ++K G  K   K++ ++H+ +++ Y   ++
Sbjct: 1149 KSLYDSLIKDHEKLELLHERQASEY--ESLISKHGTLKSAHKNLEVEHRDLEDRYNQLLK 1206

Query: 125  VKGAQESYEINTKVEKE 75
             KG  E  E   KVE+E
Sbjct: 1207 QKGQLEDLEKMLKVEQE 1223


>AB125644-1|BAF44475.1| 1843|Homo sapiens PKB/Akt-binding protein
            protein.
          Length = 1843

 Score = 32.3 bits (70), Expect = 2.0
 Identities = 20/77 (25%), Positives = 42/77 (54%)
 Frame = -1

Query: 305  EDLPDDEVPLNEELQIILPPRCDDVTAESSVTKTG*RKMNSKSIAIQHKLIDEVYT*HVE 126
            + L D  +  +E+L+++   +  +   ES ++K G  K   K++ ++H+ +++ Y   ++
Sbjct: 1150 KSLYDSLIKDHEKLELLHERQASEY--ESLISKHGTLKSAHKNLEVEHRDLEDRYNQLLK 1207

Query: 125  VKGAQESYEINTKVEKE 75
             KG  E  E   KVE+E
Sbjct: 1208 QKGQLEDLEKMLKVEQE 1224


>AB033038-1|BAA86526.2|  802|Homo sapiens KIAA1212 protein protein.
          Length = 802

 Score = 32.3 bits (70), Expect = 2.0
 Identities = 20/77 (25%), Positives = 42/77 (54%)
 Frame = -1

Query: 305 EDLPDDEVPLNEELQIILPPRCDDVTAESSVTKTG*RKMNSKSIAIQHKLIDEVYT*HVE 126
           + L D  +  +E+L+++   +  +   ES ++K G  K   K++ ++H+ +++ Y   ++
Sbjct: 109 KSLYDSLIKDHEKLELLHERQASEY--ESLISKHGTLKSAHKNLEVEHRDLEDRYNQLLK 166

Query: 125 VKGAQESYEINTKVEKE 75
            KG  E  E   KVE+E
Sbjct: 167 QKGQLEDLEKMLKVEQE 183


>M10321-1|AAB59512.1| 2074|Homo sapiens F8VWF protein.
          Length = 2074

 Score = 30.3 bits (65), Expect = 8.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 755 LQCLSMSNCETLQVPPGIVKHRNSFRSLHR 666
           L+C+SM +      PPG+V+H N   +L R
Sbjct: 58  LECMSMGSVSGCLCPPGMVRHENRCVALER 87


>DQ501251-1|ABF68612.1|  360|Homo sapiens cyclon protein.
          Length = 360

 Score = 30.3 bits (65), Expect = 8.1
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = +2

Query: 269 PRSVEPRRPEDLLVQSHRNH*RLFPRSVLC*PRP---APKCT 385
           P +  P+R +DL ++S +      P S  C P+P   APKC+
Sbjct: 87  PGAASPQRQQDLHLESPQRQPEYSPESPRCQPKPSEEAPKCS 128


>BC001378-1|AAH01378.1|  360|Homo sapiens coiled-coil domain
           containing 86 protein.
          Length = 360

 Score = 30.3 bits (65), Expect = 8.1
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = +2

Query: 269 PRSVEPRRPEDLLVQSHRNH*RLFPRSVLC*PRP---APKCT 385
           P +  P+R +DL ++S +      P S  C P+P   APKC+
Sbjct: 87  PGAASPQRQQDLHLESPQRQPEYSPESPRCQPKPSEEAPKCS 128


>AK025974-1|BAB15304.1|  360|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ22321 fis, clone HRC05390. ).
          Length = 360

 Score = 30.3 bits (65), Expect = 8.1
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = +2

Query: 269 PRSVEPRRPEDLLVQSHRNH*RLFPRSVLC*PRP---APKCT 385
           P +  P+R +DL ++S +      P S  C P+P   APKC+
Sbjct: 87  PGAASPQRQQDLHLESPQRQPEYSPESPRCQPKPSEEAPKCS 128


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,868,831
Number of Sequences: 237096
Number of extensions: 2327302
Number of successful extensions: 6975
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6975
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9423020542
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)