Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11j02
         (387 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces pom...    25   3.1  
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha...    25   4.1  
SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyc...    25   5.5  
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    25   5.5  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     25   5.5  
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    24   7.2  
SPBC651.07 |csa1||sequence orphan|Schizosaccharomyces pombe|chr ...    24   9.6  
SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po...    24   9.6  

>SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 188

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = +3

Query: 195 WIFKSFNS*GLFKLIQLWDTFDSKLGVVRHCVRGP 299
           W   S    GL++++  +DT +++ G      +GP
Sbjct: 85  WFLNSVGPDGLYRMVSAFDTKEAQAGCTFGYTKGP 119


>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 496

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 260 VKGIPQLDELEKALAVKGLKDPWIRNEAWRYHP 162
           +KGI  LDEL+KA+ +K  +   +    +R  P
Sbjct: 243 IKGILTLDELQKAIKLKQTELDKLERRLYRPSP 275


>SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 442

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +1

Query: 172 LQASFLIHGSLSPLTAKA 225
           ++ASF+ HG +SPL  +A
Sbjct: 18  IEASFVPHGKISPLIKRA 35


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 177 SLISDPWIFKSFNS*GLFKLIQLWDTFDSKL 269
           + I DP++ +SF+   L KLI   +T D  L
Sbjct: 540 AFIRDPYLIESFDEEPLTKLISSLETDDPSL 570


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 288 VRGPMSVTTHCLLLFVYLKRLPFTSHTII 374
           V G + + T C LL  YL   PF  HT +
Sbjct: 635 VVGSLFMFTICNLLMYYLYGSPFLEHTYL 663


>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +3

Query: 84  DYCESQSNGKSSKEEFSGSLPASAKSRVISPSLISDP 194
           +Y ++QS   ++      SLP  +   ++ P+L+S+P
Sbjct: 511 NYSQAQSPNLATPSPSFSSLPDVSLPPIVKPNLMSEP 547


>SPBC651.07 |csa1||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 268

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -3

Query: 187 EMRLGDITLDLALAGREPENSSLEDFPL 104
           E+   D  LD +      E+  L+DFPL
Sbjct: 61  ELACNDAVLDKSFLNERLEHCKLQDFPL 88


>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -3

Query: 244 NWMSLKRP*LLK-DLKIHGSEMRLGDITLDLALAGREPENSSLEDFPLDW 98
           NWM  ++    K + ++H    +L D  L+  L  R   +S+ ++  +DW
Sbjct: 63  NWMEKRKARFKKKETEVHEKPSQLPDSGLNYGLNIRVASSSAADNEIVDW 112


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,734,867
Number of Sequences: 5004
Number of extensions: 35974
Number of successful extensions: 90
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)