Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11j02
(387 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0031 - 25215587-25216145,25218108-25218133,25218262-252184... 34 0.045
06_03_1164 + 28104181-28104272,28104359-28104989 32 0.14
01_01_1169 + 9313135-9313332,9313496-9314229,9314933-9317036 29 0.97
09_06_0309 - 22206812-22206884,22207008-22207103,22207531-222076... 28 2.2
02_04_0471 + 23192001-23192102,23192229-23192356,23192440-231931... 27 3.9
01_06_0153 - 27044553-27044669,27044842-27044964,27045066-270451... 27 3.9
01_05_0116 - 18294960-18295078,18295967-18296102,18297167-182972... 27 3.9
04_03_0151 + 11905926-11906618 27 6.9
02_05_0691 - 30949234-30949243,30949613-30950001,30950425-309504... 27 6.9
03_02_0150 + 5941560-5941739,5942027-5942118,5942232-5942298,594... 26 9.1
02_01_0401 + 2927581-2927669,2927795-2927921,2928354-2928437,292... 26 9.1
>02_05_0031 -
25215587-25216145,25218108-25218133,25218262-25218486,
25219809-25220111
Length = 370
Score = 33.9 bits (74), Expect = 0.045
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1
Query: 339 GKQIIVNNGWSRTWAPVHSASLLPVYCQR 253
G +++V NGW R WA S +++ V C R
Sbjct: 269 GLELVVRNGWRRVWAEGDSKTVVDVVCDR 297
>06_03_1164 + 28104181-28104272,28104359-28104989
Length = 240
Score = 32.3 bits (70), Expect = 0.14
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 339 GKQIIVNNGWSRTWAPVHSASLLPVYCQR 253
G ++ V NGW R WA S +++ V C R
Sbjct: 139 GLELAVRNGWRRVWAEGDSKAVVDVVCDR 167
>01_01_1169 + 9313135-9313332,9313496-9314229,9314933-9317036
Length = 1011
Score = 29.5 bits (63), Expect = 0.97
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -2
Query: 125 FFRGFPIGLGLTVITVALDKFMGGGEXWAWSRARGRAID 9
F G+ I G V A + F+GGG W A G+ ID
Sbjct: 475 FREGYEIKRGPLVRRWAAEGFVGGGREWTPEEAAGKYID 513
>09_06_0309 -
22206812-22206884,22207008-22207103,22207531-22207619,
22207738-22207820,22207932-22208048,22208132-22208319,
22208430-22208500,22208570-22208782,22210022-22210081,
22210186-22210476,22210590-22211894
Length = 861
Score = 28.3 bits (60), Expect = 2.2
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -2
Query: 116 GFPIGLGLTVITVALDKFMGGGEXWAWSRARGRAID 9
G P+ L+V AL+ GG W W R GR++D
Sbjct: 305 GRPLASALSVSVYALEA--EGGGSWVWVRKDGRSMD 338
>02_04_0471 +
23192001-23192102,23192229-23192356,23192440-23193108,
23193900-23194086
Length = 361
Score = 27.5 bits (58), Expect = 3.9
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Frame = +1
Query: 40 AHXSPPPINLSRATVITVSPSPMGN-----PLKKNFLALC-QRVPNPG*YLQASFLIHGS 201
AH SPPP+ R SP + L ++F A C +RV + FL+
Sbjct: 222 AHGSPPPLPPPRTGQCCRMASPCAHRRGLLQLARHFFAGCGRRVAGGCTPCRRFFLLLRL 281
Query: 202 LSPLTAKAFSSSSSCGIPLTVNWE 273
S + K S SCG+PL N++
Sbjct: 282 HSSVCDK--SDDDSCGVPLCSNFK 303
>01_06_0153 -
27044553-27044669,27044842-27044964,27045066-27045161,
27045323-27045370,27046360-27046458,27046554-27046592,
27047032-27047133,27047225-27047347,27047535-27047783
Length = 331
Score = 27.5 bits (58), Expect = 3.9
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +1
Query: 28 ARDHAHXSPPPINLSRATVITVSPSPMGNPLKKNFLALCQRVPN 159
AR AH P + L A+ T++PSP +P ++ + VP+
Sbjct: 9 ARVTAHLLPSSLPLPLASAPTLAPSPAASPASDSYRRVHGDVPS 52
>01_05_0116 -
18294960-18295078,18295967-18296102,18297167-18297275,
18298027-18298070,18298305-18298372,18298625-18298695,
18299068-18300005
Length = 494
Score = 27.5 bits (58), Expect = 3.9
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +1
Query: 7 RSMALPRARDHAHXSPPPINLSRATVITVSPSP 105
RS LPR + PP L A +T+SPSP
Sbjct: 18 RSPLLPRFTQYNSPDDPPRGLRGARRLTLSPSP 50
>04_03_0151 + 11905926-11906618
Length = 230
Score = 26.6 bits (56), Expect = 6.9
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 7/54 (12%)
Frame = +1
Query: 22 PRARDHAHXSPPPINLSRATVIT-----VSPSPMGNPLKKNFL--ALCQRVPNP 162
PR A P ++ S A I + SP+GNP K FL A +RV P
Sbjct: 158 PRQASSAPGHPAVVSSSNAPRIAPIQRPIGKSPLGNPASKKFLPAAAVKRVVTP 211
>02_05_0691 -
30949234-30949243,30949613-30950001,30950425-30950449,
30950594-30950688,30950842-30951359,30951652-30951736,
30951842-30952633
Length = 637
Score = 26.6 bits (56), Expect = 6.9
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 208 DLKIHGSEMRLGDITLDLALAGREPENS 125
+ ++HG EM L +I+ DLA + NS
Sbjct: 519 ETRVHGLEMALDEISRDLAASSGRTSNS 546
>03_02_0150 +
5941560-5941739,5942027-5942118,5942232-5942298,
5942401-5942523,5942692-5942784,5943149-5943278,
5943483-5943564,5943682-5943814,5944246-5944451,
5944538-5944663,5945024-5945333,5945518-5945643,
5946151-5946456
Length = 657
Score = 26.2 bits (55), Expect = 9.1
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +1
Query: 199 SLSPLTAKAFSSSSSCGIPL-TVNWE**GTVY 291
SLSP FS S+ CG P TV W G ++
Sbjct: 213 SLSPAGTLTFSRSTMCGPPARTVGWRDPGFIH 244
>02_01_0401 +
2927581-2927669,2927795-2927921,2928354-2928437,
2928546-2928662,2928754-2928945,2929031-2929234,
2929322-2929809,2930429-2930528,2930686-2930745,
2931007-2931126,2931407-2931751
Length = 641
Score = 26.2 bits (55), Expect = 9.1
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +3
Query: 93 ESQSNGKSSKEEFSGSLPASAKSRVISPSLISDPWIFKSFN 215
ES SS E SGS AS I PS++ P + + N
Sbjct: 340 ESSDCSSSSAERLSGSTLASFSDSSIIPSMLRSPSVDSNRN 380
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,507,028
Number of Sequences: 37544
Number of extensions: 252475
Number of successful extensions: 756
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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