Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11j02
         (387 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-3244|AAF46744.1|  110|Drosophila melanogaster CG10320-P...    88   3e-18
AF220096-1|AAF26436.1|  380|Drosophila melanogaster homeobox pro...    29   1.6  
BT010312-1|AAQ23630.1| 1482|Drosophila melanogaster AT29286p pro...    28   3.7  
AE013599-2415|AAF57906.3| 1868|Drosophila melanogaster CG30460-P...    28   3.7  
BT023211-1|AAY55627.1|  425|Drosophila melanogaster IP10727p pro...    28   4.9  
AE013599-2989|AAF57488.2|  425|Drosophila melanogaster CG11788-P...    28   4.9  
AL022018-2|CAA17685.2| 1279|Drosophila melanogaster EG:8D8.2 pro...    27   8.5  
AE014298-178|AAF45604.1| 1279|Drosophila melanogaster CG11409-PB...    27   8.5  

>AE013599-3244|AAF46744.1|  110|Drosophila melanogaster CG10320-PA
           protein.
          Length = 110

 Score = 88.2 bits (209), Expect = 3e-18
 Identities = 40/82 (48%), Positives = 54/82 (65%), Gaps = 1/82 (1%)
 Frame = -2

Query: 290 YTVPHYSQFTVKGIPQLDELEKALAVKGLKDPWIRNEAWRYHP-GFGTRWQRARKFFFRG 114
           YTVPH S + V+ +PQL E+++AL  +GLKDPW+RNE WRY P  FGT   R   F FRG
Sbjct: 9   YTVPHASTYKVESVPQLVEVKEALGRQGLKDPWLRNEVWRYEPKAFGTHRSRLNTFLFRG 68

Query: 113 FPIGLGLTVITVALDKFMGGGE 48
             +G    + TVA++  +G G+
Sbjct: 69  LGVGFCAFLATVAVEYALGIGK 90


>AF220096-1|AAF26436.1|  380|Drosophila melanogaster homeobox
           protein Scarecrow protein.
          Length = 380

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +3

Query: 66  FIQSHCDYCESQSNGKSSKEEFSGSLPASAKSRVISPSLISD 191
           + Q+H   C+ Q+  K+  E+   + PAS+  RV  P L+ D
Sbjct: 212 WFQNHRYKCKRQAKRKAMAEQNQHNQPASSPRRVAVPVLVKD 253


>BT010312-1|AAQ23630.1| 1482|Drosophila melanogaster AT29286p
           protein.
          Length = 1482

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +1

Query: 7   RSMALPRARDHAHXSPPPINLSRATVITVSPSPMGNPL 120
           ++  LP A   A    PPIN    T +  +P  + +PL
Sbjct: 304 KNFGLPNAERTAGLPSPPINSRETTSVNAAPETVNSPL 341


>AE013599-2415|AAF57906.3| 1868|Drosophila melanogaster CG30460-PC,
           isoform C protein.
          Length = 1868

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +1

Query: 7   RSMALPRARDHAHXSPPPINLSRATVITVSPSPMGNPL 120
           ++  LP A   A    PPIN    T +  +P  + +PL
Sbjct: 302 KNFGLPNAERTAGLPSPPINSRETTSVNAAPETVNSPL 339


>BT023211-1|AAY55627.1|  425|Drosophila melanogaster IP10727p
           protein.
          Length = 425

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 322 KQWVVTDMGPRTQCLTTPSL 263
           K+W + +M P  +C TTP+L
Sbjct: 381 KRWTMEEMEPYIECFTTPNL 400


>AE013599-2989|AAF57488.2|  425|Drosophila melanogaster CG11788-PA
           protein.
          Length = 425

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 322 KQWVVTDMGPRTQCLTTPSL 263
           K+W + +M P  +C TTP+L
Sbjct: 381 KRWTMEEMEPYIECFTTPNL 400


>AL022018-2|CAA17685.2| 1279|Drosophila melanogaster EG:8D8.2
           protein.
          Length = 1279

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +1

Query: 1   QQRSMALPRARDHAHXSPPPINLSRATVITVSPSPMGNP 117
           QQ+   +P+A  +   +PPP+       +T +  P  NP
Sbjct: 178 QQQFRPMPQATTYHPPAPPPVVYQDFKPVTAASQPSANP 216


>AE014298-178|AAF45604.1| 1279|Drosophila melanogaster CG11409-PB
           protein.
          Length = 1279

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +1

Query: 1   QQRSMALPRARDHAHXSPPPINLSRATVITVSPSPMGNP 117
           QQ+   +P+A  +   +PPP+       +T +  P  NP
Sbjct: 178 QQQFRPMPQATTYHPPAPPPVVYQDFKPVTAASQPSANP 216


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,786,603
Number of Sequences: 53049
Number of extensions: 403025
Number of successful extensions: 1257
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1256
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 1066083345
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)