Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11j02
         (387 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70034-4|CAA93855.1|  103|Caenorhabditis elegans Hypothetical pr...    52   2e-07
Z68507-3|CAA92824.2| 1134|Caenorhabditis elegans Hypothetical pr...    27   4.6  
Z93385-10|CAB07643.1|  702|Caenorhabditis elegans Hypothetical p...    27   6.1  
Z81114-7|CAB03290.1|  702|Caenorhabditis elegans Hypothetical pr...    27   6.1  
AF043702-7|AAK21492.4| 1655|Caenorhabditis elegans Intestinal ne...    27   6.1  
Z92827-2|CAB07327.2|  394|Caenorhabditis elegans Hypothetical pr...    26   8.1  
Z83110-2|CAB05524.1|  299|Caenorhabditis elegans Hypothetical pr...    26   8.1  
U97005-4|AAB52283.1|  314|Caenorhabditis elegans Hypothetical pr...    26   8.1  
U50309-4|AAG24133.1|  267|Caenorhabditis elegans Hypothetical pr...    26   8.1  
U40061-7|AAA81153.1|  357|Caenorhabditis elegans Unidentified vi...    26   8.1  

>Z70034-4|CAA93855.1|  103|Caenorhabditis elegans Hypothetical
           protein C18E9.4 protein.
          Length = 103

 Score = 51.6 bits (118), Expect = 2e-07
 Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
 Frame = -2

Query: 290 YTVPHYSQFT-VKGIPQLDELEKALAVKGLKDPWIRNEAWRY---HPGFGTRWQRARKFF 123
           + +P+YS ++  +  PQL + EK LA  GLKDPWIRN  + Y   +P    +W   +K  
Sbjct: 9   FKIPNYSIYSNFRDFPQLAQHEKRLAQIGLKDPWIRNYVYLYDRKYPHVVGQWAHFKKLI 68

Query: 122 FRGFPIGLGLTVITVALDK 66
             G+  G+  T   + +++
Sbjct: 69  LPGWKAGVAFTAALIFVEE 87


>Z68507-3|CAA92824.2| 1134|Caenorhabditis elegans Hypothetical protein
            M18.5 protein.
          Length = 1134

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -3

Query: 208  DLKIHGSEMRLGDITLDLALAGREPENSSLEDFPLDWDSQ 89
            DLK+   E+ + D+   ++L        + E+   DW+SQ
Sbjct: 908  DLKVMNEEVAVADVMRSVSLLSYRMLEGNFEEVAKDWNSQ 947


>Z93385-10|CAB07643.1|  702|Caenorhabditis elegans Hypothetical
           protein M01E5.6 protein.
          Length = 702

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -3

Query: 355 NGNLLR*TNNSKQWVVTDM 299
           NG+ L  TN SK+W+V D+
Sbjct: 589 NGSFLFGTNTSKEWIVEDI 607


>Z81114-7|CAB03290.1|  702|Caenorhabditis elegans Hypothetical
           protein M01E5.6 protein.
          Length = 702

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -3

Query: 355 NGNLLR*TNNSKQWVVTDM 299
           NG+ L  TN SK+W+V D+
Sbjct: 589 NGSFLFGTNTSKEWIVEDI 607


>AF043702-7|AAK21492.4| 1655|Caenorhabditis elegans Intestinal
            neurexin-like protein 1 protein.
          Length = 1655

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +1

Query: 28   ARDHAHXSPPPINLSRATVITVSPSPMGNPLKKNFLALCQRVPNP 162
            ARD  +     I L  A  I   P P   P+KK+  A   ++PNP
Sbjct: 1494 ARDDEYLHDEDIPLHMAPTILRHPQPSPPPIKKS-AASNYKIPNP 1537


>Z92827-2|CAB07327.2|  394|Caenorhabditis elegans Hypothetical
           protein C29F7.2 protein.
          Length = 394

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 239 DELEKALAVKGLKDPWIRNE 180
           D+L   L  KG+K PW R E
Sbjct: 314 DKLSSGLEAKGVKMPWTREE 333


>Z83110-2|CAB05524.1|  299|Caenorhabditis elegans Hypothetical
           protein F57C2.2 protein.
          Length = 299

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 272 SQFTVKGIPQLDELEKALAVKGLKD 198
           S+  VK I Q+D +EKA A+K   D
Sbjct: 255 SKLLVKSIRQMDSIEKAKALKSSPD 279


>U97005-4|AAB52283.1|  314|Caenorhabditis elegans Hypothetical
           protein F19F10.5 protein.
          Length = 314

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 96  SQSNGKSSKEEFSGSLPASAKSRVISPSLISDPW 197
           S SN  S++   + S P S+   VI+P ++ DP+
Sbjct: 238 SSSNSSSARTMSATSSPTSSLEDVINPPVLIDPF 271


>U50309-4|AAG24133.1|  267|Caenorhabditis elegans Hypothetical
           protein F58G4.4 protein.
          Length = 267

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 150 SAKSRVISPSLISDPWIFKSFNS 218
           S K  V  P L++DPW+ K+ ++
Sbjct: 95  SGKKNVRLPLLVNDPWVHKTISN 117


>U40061-7|AAA81153.1|  357|Caenorhabditis elegans Unidentified
           vitellogenin-linkedtranscript protein 7 protein.
          Length = 357

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 86  ITVALDKFMGGGEXWAWS 33
           +T++LD+F G  E W W+
Sbjct: 210 MTISLDEFFGTPELWQWA 227


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,430,538
Number of Sequences: 27780
Number of extensions: 199819
Number of successful extensions: 613
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 576961812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)