Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11i24
         (152 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0027 - 195321-195932,197206-197415                               31   0.17 
04_01_0412 + 5469200-5469395,5469554-5469672                           25   6.3  
03_01_0218 - 1717246-1717892,1717995-1718163,1718262-1720022,172...    25   8.3  

>08_01_0027 - 195321-195932,197206-197415
          Length = 273

 Score = 30.7 bits (66), Expect = 0.17
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = -2

Query: 151 IVPNQLSASRNVAXIQGVTCL*RVVADPKHAXLVISXXXGILYGNXYIM 5
           I PN+  A +N+A    + CL R++ +  HA + I+   G+L  +  I+
Sbjct: 78  IWPNESIAVQNIASKSSLGCLSRMLTESIHADVTINTTDGVLKAHKAIL 126


>04_01_0412 + 5469200-5469395,5469554-5469672
          Length = 104

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 138 SCLQAATLXLSRE*PVCNGWLRI 70
           +C +A+   LSR  P  NGW R+
Sbjct: 21  ACSEASATGLSRRVPNTNGWPRV 43


>03_01_0218 -
           1717246-1717892,1717995-1718163,1718262-1720022,
           1720531-1720610,1720854-1720981,1721004-1721012,
           1723701-1723742,1725891-1726002,1726358-1726514,
           1726678-1726762,1727628-1727713,1727998-1728042
          Length = 1106

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +2

Query: 59  GMLRIRNHPLQTGYSLDXCNVAACRQLVRYN 151
           G+ R+RNHP    Y+L+  N  A R+ V YN
Sbjct: 124 GVARLRNHPGAVIYTLNTGNRDAMREGV-YN 153


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,857,970
Number of Sequences: 37544
Number of extensions: 44583
Number of successful extensions: 76
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 14,793,348
effective HSP length: 31
effective length of database: 13,629,484
effective search space used: 258960196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)