Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11i24
         (152 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    19   4.3  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          18   9.9  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    18   9.9  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    18   9.9  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      18   9.9  

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 19.4 bits (38), Expect = 4.3
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -1

Query: 104 GSNLSVTGGC 75
           GS +++TGGC
Sbjct: 294 GSLVAITGGC 303


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 18.2 bits (35), Expect = 9.9
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = +2

Query: 77  NHPLQTGY 100
           +HP+ TGY
Sbjct: 287 DHPIPTGY 294


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 18.2 bits (35), Expect = 9.9
 Identities = 7/19 (36%), Positives = 9/19 (47%)
 Frame = -1

Query: 125 PQRCXYPGSNLSVTGGCGS 69
           P+   YP    +  G CGS
Sbjct: 107 PKLTPYPNWAQNKAGACGS 125


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 18.2 bits (35), Expect = 9.9
 Identities = 5/11 (45%), Positives = 9/11 (81%)
 Frame = +3

Query: 21  PYKIPSXQEIT 53
           P++IP  QE++
Sbjct: 274 PHRIPQLQEVS 284


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 18.2 bits (35), Expect = 9.9
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = +2

Query: 77  NHPLQTGY 100
           +HP+ TGY
Sbjct: 287 DHPIPTGY 294


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,020
Number of Sequences: 438
Number of extensions: 561
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 30
effective length of database: 133,203
effective search space used:  2664060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)