Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11i22
         (834 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.06 |mug147||sequence orphan|Schizosaccharomyces pombe|c...    31   0.15 
SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2 |Schizosacc...    28   1.9  
SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase Lac...    27   3.3  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    26   7.6  

>SPBC56F2.06 |mug147||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 411

 Score = 31.5 bits (68), Expect = 0.15
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = -2

Query: 725 RKFKASEIIGHSLKKINSFLAFSERKKKLLFSRLSYVSFQANDRDKYIFRYM 570
           +KFK  ++  HS+ K   F   ++ +K  L+S L+   ++ +D   Y   YM
Sbjct: 52  KKFKGEDVFAHSISK--PFDGQNDEEKPSLYSHLTNELYETHDSSDYFGTYM 101


>SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -2

Query: 707 EIIGHSLKKINSFLAFSERKKKLLFSRLSYVSFQANDRDKYIF 579
           +I+   +K I   +   E+K+KL FS LSY+      +  Y+F
Sbjct: 408 DILSLKIKTIYPDIIKLEQKEKLFFSFLSYIDQHTGHQFDYLF 450


>SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase
           Lac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = -2

Query: 809 KNIFYLRT*LIFTCIESFLFIIIY*QLIRKFKASEIIGHSLKKINSF-LAFSERKKKLLF 633
           K + Y+ T +++     F+F+ IY +    FK    +  +++ INSF L ++  + K   
Sbjct: 266 KCLNYVNTVIVYPIFVIFVFVWIYMRHYLNFKIMWAVWGTMRTINSFDLDWAAEQYKCWI 325

Query: 632 SR 627
           SR
Sbjct: 326 SR 327


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
 Frame = +3

Query: 696  SDDFAC--FKFAYQLLINYNKQKRFNACKY*LGT*IK----YIFNNILQPF 830
            S DF+   FKF  +LL  + +       KY LGT  K    ++   I+QPF
Sbjct: 1271 SSDFSIGRFKFLIKLLFCHGRWSYVRLSKYILGTFYKEQFFFLMQAIMQPF 1321


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,050,399
Number of Sequences: 5004
Number of extensions: 57675
Number of successful extensions: 103
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)