Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11i21
(838 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 32 0.12
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.27
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 0.82
SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase Cgs2|Schi... 28 1.4
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 27 2.5
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi... 27 3.3
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch... 27 3.3
SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual 27 3.3
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac... 27 3.3
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 27 4.4
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 26 5.8
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 7.6
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 7.6
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 26 7.6
SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyce... 26 7.6
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 26 7.6
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 31.9 bits (69), Expect = 0.12
Identities = 32/130 (24%), Positives = 50/130 (38%), Gaps = 4/130 (3%)
Frame = -3
Query: 482 KTPAPNTYSMPPVLGEAKEGSKRAAPAFSITGRGKFSEAKGLMPGPGTYTTDRAAAALTK 303
K+ P +++ PPV A + R GL G ++ +
Sbjct: 63 KSNTPKSFAAPPVPTGAPSLPTSSNNTQQAEERPSMPALGGLFAGGMPKLRHIGKSSASA 122
Query: 302 RPPAFTM--APRRELKPPTAAVPGPGVYCPEKVCVTLPWAPAHTFGIRHS--PFAGQAAH 135
PP+ P+ EL+PPT+A P P + P + P P+ I S P A AA
Sbjct: 123 APPSAPAPPTPQSELRPPTSAPPRPSI--PPPSPASAPPIPSKAPPIPSSLPPPAQPAAP 180
Query: 134 YAAPEGIPAI 105
+P P++
Sbjct: 181 VKSPPSAPSL 190
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 30.7 bits (66), Expect = 0.27
Identities = 37/133 (27%), Positives = 49/133 (36%), Gaps = 1/133 (0%)
Frame = -3
Query: 503 SLPGPGSKTPAPNTYSMPPVLGEAKEGSKRAAPAFSITGRGKFSEAKGLMPGPGTYTTDR 324
S P P AP+T PP L ++ S AP +I GR A L P R
Sbjct: 359 SAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGR----SAPAL---PPLGNASR 411
Query: 323 AAAALTKRPPAFTMAPRRELKPPTAAVPGP-GVYCPEKVCVTLPWAPAHTFGIRHSPFAG 147
+ PP+ + L PP+A P G + + P AP G+ +P
Sbjct: 412 TSTPPVPTPPSLPPSAPPSL-PPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLP 470
Query: 146 QAAHYAAPEGIPA 108
AA P PA
Sbjct: 471 PAAPAPPPAPAPA 483
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.1 bits (62), Expect = 0.82
Identities = 43/189 (22%), Positives = 61/189 (32%)
Frame = -3
Query: 722 PLANIAKAGPGPASYNTEGMTAKGRALGPAASLHGRWPPPRVEPTPAPCDYEPNKAARAV 543
P A +A+ P P + A P + PP + PT P + + A +
Sbjct: 1004 PAAPLARVPPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPI-PTSTPPVPKSSSGAPSA 1062
Query: 542 LDHAPAFSIGLRVSLPGPGSKTPAPNTYSMPPVLGEAKEGSKRAAPAFSITGRGKFSEAK 363
PA S + S+P P P P +PPV + P+ ++
Sbjct: 1063 PPPVPAPSSEIP-SIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVP---PVPAPS 1118
Query: 362 GLMPGPGTYTTDRAAAALTKRPPAFTMAPRRELKPPTAAVPGPGVYCPEKVCVTLPWAPA 183
G P P AA P P+ + P P P K V P PA
Sbjct: 1119 GAPPVP----KPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVP-KPSVAAPPVPA 1173
Query: 182 HTFGIRHSP 156
+ GI P
Sbjct: 1174 PSSGIPPVP 1182
>SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase
Cgs2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 346
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -2
Query: 819 TSRSISPFPYR*TASRXEETKSSSFYFR 736
T+ SI PFP +S +E KSS+F FR
Sbjct: 182 TTLSILPFPVNHGSSFGQELKSSAFLFR 209
>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1159
Score = 27.5 bits (58), Expect = 2.5
Identities = 20/86 (23%), Positives = 33/86 (38%), Gaps = 1/86 (1%)
Frame = -3
Query: 593 PTPAPCDYEPNKAARAVLDHAPAFSIGLRVSLPGPGSKTPAPNTYSMPPVLGEAKEGSKR 414
P P+ + +A + +PAFS G + + P+ N+ + P G + + +
Sbjct: 876 PKPSTNTADGKDSASNLTTPSPAFSFGNNSGVKASSNNNPSTNSSTAPFSFGTSNKPAFS 935
Query: 413 AAPAFS-ITGRGKFSEAKGLMPGPGT 339
A S T G A P P T
Sbjct: 936 FGSATSKTTSEGTAPAASASAPAPTT 961
>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
Gut2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 649
Score = 27.1 bits (57), Expect = 3.3
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 349 PGINPLASENFPRPVILKAGAALLLPSFASPSTGGI 456
P P + FPR V+ AG ++LP + P GI
Sbjct: 297 PQGEPPKTAQFPRMVVPSAGVHVVLPEYYCPPNIGI 332
>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
Trk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 880
Score = 27.1 bits (57), Expect = 3.3
Identities = 34/146 (23%), Positives = 54/146 (36%), Gaps = 7/146 (4%)
Frame = -3
Query: 686 ASYNTEGMTAKGRALGPAASLHGRWPPPRVEPTPAPCDYEPNKAARAVLDHAPAFSIGLR 507
+S+N TA +S + + RV+ P Y P + DH A +
Sbjct: 298 SSHNPSLETANDGNQETVSSSNSNYSTTRVDNDPHVASYSPQNSN---FDHQAAATTNDA 354
Query: 506 VSLPGPGSK-----TPAPNTYSMPPVLGEAKEGSKRAAPAFSITGRGKFSEAKGLMPGPG 342
GS TP P P + G+++ A + GRG+ K P
Sbjct: 355 HQNVVRGSAITIAPTPVPRHNRRPIYFADDTNGAEQEKGAHRLDGRGR-KRGKSFAVTPT 413
Query: 341 TYTTDRAAAALT-KRPPAFTMA-PRR 270
+ +R+ + L + +FT A PRR
Sbjct: 414 LHRNERSMSVLPFQLAKSFTSALPRR 439
>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
Length = 554
Score = 27.1 bits (57), Expect = 3.3
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +1
Query: 331 VVYVPGPGINPLASENFPRPVILKAGAALLLPSFASPST 447
V+YVP P I PL EN +I ++LLP + S +T
Sbjct: 335 VLYVPSPQIQPLWLENEDSNII--PTNSMLLPQWGSITT 371
>SPCC1393.02c |||non-specific DNA binding protein Spt2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 406
Score = 27.1 bits (57), Expect = 3.3
Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 1/100 (1%)
Frame = -3
Query: 563 NKAARAVLDHAPAFSIGLRVSLPGPGSKTPAPNTYSMPPVLGEAKEGSK-RAAPAFSITG 387
+K R+ H+P + S P + A +T S+PP A GS+ A+ A+ TG
Sbjct: 143 SKDKRSQSPHSPKKPVKNSSSRDQPVRNSGATSTASLPPAGLRAGRGSQISASLAWLKTG 202
Query: 386 RGKFSEAKGLMPGPGTYTTDRAAAALTKRPPAFTMAPRRE 267
+ + P P + ++R A + P+R+
Sbjct: 203 GASAAPSNPRQPPPTSNFSNRKARYASNGLVQLQTGPKRD 242
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 26.6 bits (56), Expect = 4.4
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -3
Query: 734 QKLDPLANIAKAGPGPASYNTEGMTAK 654
+K+DPL +I +A P P + G T+K
Sbjct: 1960 RKVDPLEDILQAMPPPTTRKARGKTSK 1986
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 26.2 bits (55), Expect = 5.8
Identities = 32/122 (26%), Positives = 47/122 (38%)
Frame = -3
Query: 611 PPPRVEPTPAPCDYEPNKAARAVLDHAPAFSIGLRVSLPGPGSKTPAPNTYSMPPVLGEA 432
PPP+ +P P + RA P VS+P P + +P+ T +PPV
Sbjct: 1010 PPPK-QPANRVVPLPPTASQRASAYEPPT------VSVPSPSALSPSV-TPQLPPV---- 1057
Query: 431 KEGSKRAAPAFSITGRGKFSEAKGLMPGPGTYTTDRAAAALTKRPPAFTMAPRRELKPPT 252
S R P S + +P P +T +++ RPP T A R T
Sbjct: 1058 ---SSRLPPV---------SATRPQIPQPPPVSTALPSSSAVSRPPIATSAGRSSTAAST 1105
Query: 251 AA 246
+A
Sbjct: 1106 SA 1107
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 25.8 bits (54), Expect = 7.6
Identities = 22/78 (28%), Positives = 27/78 (34%)
Frame = -3
Query: 593 PTPAPCDYEPNKAARAVLDHAPAFSIGLRVSLPGPGSKTPAPNTYSMPPVLGEAKEGSKR 414
P P D +K A S G + P PGS T P S E G+ +
Sbjct: 544 PIPTSADTVESKHAAGSGSATTIPSPGSATTKPTPGSATTKPTPVS---ATEEHAAGTTK 600
Query: 413 AAPAFSITGRGKFSEAKG 360
APA T + A G
Sbjct: 601 PAPAAGATATAENETADG 618
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.8 bits (54), Expect = 7.6
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -1
Query: 193 GRRHIHLEFDTLRSPAKQLTTQHLKGSLLSN 101
G ++HL+++ P K LTT+ K S N
Sbjct: 535 GLTYLHLDYNCNLKPTKTLTTKERKKSRFGN 565
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 25.8 bits (54), Expect = 7.6
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = -3
Query: 380 KFSEAKGLMPGPGTYTTDRAAAALTKRPPAFTMAPRRELKPPTAAVPGP 234
K+S + P P T +A +RPP+ PRR+ P A+ P
Sbjct: 185 KYSAPSKIYPSPRRSTAATLESAYEERPPSL---PRRKPSRPGTAITLP 230
>SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 238
Score = 25.8 bits (54), Expect = 7.6
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = -1
Query: 451 HRYLVKRKKGVKELHRLSVSQVV 383
+++L +KG +ELHR +SQ++
Sbjct: 216 YQFLKDMRKGFRELHRKDLSQLI 238
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 25.8 bits (54), Expect = 7.6
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -3
Query: 530 PAFSIGLRVSLPGPGSKTPAPNTYSMPP 447
PA++ G R GSKTPA N+ S P
Sbjct: 828 PAWNTGSRTPAWNSGSKTPAWNSGSRTP 855
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,455,546
Number of Sequences: 5004
Number of extensions: 75369
Number of successful extensions: 244
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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