Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11i20
         (798 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   2.5  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    23   3.3  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   4.3  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   5.7  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 6/30 (20%)
 Frame = -2

Query: 359 VTLLEYDRRFEVHGP------DYIFYDYNN 288
           +  + +DR F + G       DY FYDY+N
Sbjct: 7   IKYINFDRFFFIEGMTNVLDFDYYFYDYSN 36


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 317 PDYIFYDYNNPKEVPPDVHHSYDLVVADPPFLS 219
           PDYIF + ++   +PP+   S  L   DP FL+
Sbjct: 50  PDYIFEEGDDYVTLPPEFFDS--LWQPDPYFLN 80


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 4/85 (4%)
 Frame = -2

Query: 467 LVKVIDK--VLDDRGKVALISCPTLFVPLKRQIGDRGTVTLLEYDRRFEVHGPDYIFY-- 300
           L+  ID   ++D+ GK   I  P     L   I         ++   +++   D + Y  
Sbjct: 336 LMDAIDSGYLIDEYGKKIDIYTPEGLNMLGNVIEGNSDSINTKFYGMYDILARDILGYNF 395

Query: 299 DYNNPKEVPPDVHHSYDLVVADPPF 225
           D+ N   + P    SY   + DP F
Sbjct: 396 DFQNKNNLIPSALQSYSTSMRDPAF 420


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = -2

Query: 302 YDYNNPKEVPPDVHHSYDLVVADPPF 225
           +D+ N   + P    SY   + DP F
Sbjct: 395 FDFQNKNNLIPSALQSYSTSMRDPAF 420


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,736
Number of Sequences: 438
Number of extensions: 4659
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)