Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11i19
         (459 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces...    29   0.26 
SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|...    25   5.6  
SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|...    25   5.6  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    25   7.3  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      24   9.7  
SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|ch...    24   9.7  
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy...    24   9.7  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    24   9.7  
SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces ...    24   9.7  

>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 419

 Score = 29.5 bits (63), Expect = 0.26
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -3

Query: 175 CPNWKPKSLENSAFAPGTTEGCTN*GCHDITEIQTNIRTTTVQQ 44
           C +W   S+ +SA  PG+         H+ TE   NI++  V Q
Sbjct: 375 CGDWAGSSVYSSAGCPGSCNDFVGNNPHNFTEAYWNIKSLAVYQ 418


>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 712

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = -2

Query: 353 KISIGSICVAKFSPSDT*ARPYSIYLQKESKYYL-NGFGVECSCS*VLYIFNAHLV 189
           ++SI  + V   +P     R ++  L +    YL N   + C C  V++  +AH V
Sbjct: 297 RMSIAEMVVPYGNPEHPHQRKHAFDLGEYGAGYLTNPLALGCDCKGVIHYLDAHFV 352


>SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 258

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 178 YDTRTKCALNIYSTHEHEHSTPNPFR 255
           YD++ + AL +YS H    ++PN  R
Sbjct: 34  YDSKEEGALPLYSDHARLSNSPNTHR 59


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = -1

Query: 432  DEVGLPLPTIIAGSQPVQRIFLN-FHRQNLH 343
            D V  PLP  +AGS P  R   N +   NLH
Sbjct: 1809 DSVSPPLPPFVAGSNPNARNNNNPYFYGNLH 1839


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 251 LDSI*ILSVNKLNKVELRCRLEKILLRKCFQWRFCLWKFRK 373
           L+SI + S  K NK++    L+K++    F     L+ FRK
Sbjct: 758 LESIGLTSFVKDNKLKASKELQKLIEENVFPKNLILFIFRK 798


>SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 411

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 375 IFLNFHRQNLHWKHLRSKIFSKRHLSSTLF 286
           I L++H + L  K    K  SKR L +++F
Sbjct: 350 IMLHYHNKPLEHKAFFQKYSSKRFLKASIF 379


>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 735

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -3

Query: 379 KDFSKFPQTKSPLEAFA*QNFLQATPKL 296
           KD   F   K P+EAFA    L  TPK+
Sbjct: 453 KDKDVFQLDKLPVEAFADSLGLPGTPKI 480


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 127 RERRLNFQATSVSSSGMYDTRTKCALNIYSTHEHEHSTPN 246
           R    +F  T+VSSS +    T  +  I S+   E STP+
Sbjct: 169 RAATASFSYTNVSSSVIATAYTSASSTILSSPSVEQSTPS 208


>SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 539

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 13/47 (27%), Positives = 20/47 (42%)
 Frame = +1

Query: 100 PSLYNPPWCRERRLNFQATSVSSSGMYDTRTKCALNIYSTHEHEHST 240
           PSLYN P       N +  + S +      T  + N +S + H H +
Sbjct: 255 PSLYNTPSSDYELANQEKPADSMASAASLNTPLSSNDHSLNPHAHGS 301


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,014,952
Number of Sequences: 5004
Number of extensions: 41594
Number of successful extensions: 92
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)