Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11i18
         (781 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro...    41   2e-04
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S...    34   0.026
SPBC16E9.06c |uvi31||BolA domain UV inducedv protein Uvi31|Schiz...    31   0.24 
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    30   0.43 
SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    28   1.3  
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|...    26   5.3  
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa...    25   9.2  

>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
           protein modifier Ned8|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 78

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 25/72 (34%), Positives = 37/72 (51%)
 Frame = -3

Query: 479 MKITVKQLQGGECLIDIYPSMLISELKRHVARKLHIPVEQQKXXXXXXXXLDDHTIQMYP 300
           M I VK L G E  +DI P+  +S +K  V  K  IP  QQ+         DD   + Y 
Sbjct: 1   MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESY- 59

Query: 299 NIKEGTKLNLVV 264
           +++ G+ L+LV+
Sbjct: 60  HLEGGSVLHLVL 71


>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
           Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 33.9 bits (74), Expect = 0.026
 Identities = 18/51 (35%), Positives = 31/51 (60%)
 Frame = -3

Query: 542 VLKTPGSFVTQYFKTVKIISKMKITVKQLQGGECLIDIYPSMLISELKRHV 390
           +L+ PGS+V +  KT+    K K+ VK    G+ ++DI P + I E+K ++
Sbjct: 61  LLQEPGSYVGEVIKTM---GKNKVLVKVHPEGKYVVDISPDIDIKEIKPNI 108


>SPBC16E9.06c |uvi31||BolA domain UV inducedv protein
           Uvi31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 102

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 22/74 (29%), Positives = 32/74 (43%)
 Frame = -3

Query: 311 QMYPNIKEGTKLNLVVKKPESLYDASFKHYKRQGMSDKDAANTANKLLRIVQEKFDKMSW 132
           ++Y  + E  K + +     +LY+ S+KH     M      N  +  L IV  +F  MS 
Sbjct: 14  RIYKTLSEALKTDKI-----TLYNDSYKHSHHIAMKGVPDTNETHFRLEIVSPEFSGMSR 68

Query: 131 DEVDRLCYDCLLDE 90
               RL Y  L DE
Sbjct: 69  VARHRLVYGLLKDE 82


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 29.9 bits (64), Expect = 0.43
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -3

Query: 137 SWDEVDRLCYDCLLDERGIRRPAYIENDIEIDDMFN 30
           S++E++R      L    IR P   END+++D++FN
Sbjct: 253 SFEEIERARQRFALLGDNIREPQEEENDVDVDEIFN 288


>SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 551

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 84  TSFVQQAVIAKSVNFIPGHFIKLLLNNPQ 170
           T+ +      + V F PGHFI+ +L++PQ
Sbjct: 304 TNILNHMTRLRIVPFAPGHFIEYILSHPQ 332


>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -3

Query: 482 KMKITVKQLQGGECLIDIYPSMLISELKRHVARKLHIPVE 363
           K+K+ V+ +QG  CL       + S+  R + RK    +E
Sbjct: 83  KVKLRVEDIQGKSCLTSFNGLSITSDKLRSLVRKWQTTIE 122


>SPAC1783.07c |pap1|caf3, caf3|transcription factor
           Caf3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 552

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = -3

Query: 260 KPESLYDASFKHYKRQGMSDKDAANTANKLLRIVQEKFDKMSWD 129
           +PE   D S  H KR  +SD+ +  T+++ + ++    D++  D
Sbjct: 20  EPEQSADFSASHKKRGPVSDRSSRRTSSEEVDLMPNVDDEVDGD 63


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,950,606
Number of Sequences: 5004
Number of extensions: 57747
Number of successful extensions: 146
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)